Project description:Purpose : Identification of the regulons directly and indirectly affected by the main regulators of flagellation in Shewanella putrefaciens CN-32 Methods : mRNA profiles were generated for Shewanella putrefaciens CN-32 samples by deep sequencing. The removal of ribosomal RNA was performed using the Ribo-Zero Bacteria Kit (Illumina) and cDNA libraries were generated with the ScriptSeq v2 Kit (Illumina) . The samples were sequenced in single end mode on an Illumina HiSeq 2500 device and mRNA reads were trimmed using the tool ‘cutadapt’ (version 3.5) with default settings and mapped to the NC_009438.1 (Shewanella putrefaciens CN-32) reference genome from NCBI using ‘bowtie2’ (version 2.3.5.1) with default settings for single-end sequencing.

2022-12-21 | GSE207531 | GEO

Mycoplasma suis str. Illinois

Project description:Mycoplasma suis str. Illinois Genome sequencing

| PRJNA49421 | ENA

Mycoplasma ovis str. Michigan

Project description:Mycoplasma ovis str. Michigan Genome sequencing

| PRJNA225755 | ENA

Mycoplasma wenyonii str. Massachusetts

Project description:Mycoplasma wenyonii str. Massachusetts Genome sequencing

| PRJNA73243 | ENA

Mycoplasma haemocanis str. Illinois

Project description:Mycoplasma haemocanis str. Illinois Genome sequencing

| PRJNA76583 | ENA

Mycoplasma parvum str. Indiana

Project description:Mycoplasma parvum str. Indiana Genome sequencing

| PRJNA219646 | ENA

Transcript structures in Shewanella putrefaciens CN-32

Project description:5' RNASeq of mRNA from Shewanella putrefaciens CN-32 grown aerobically in Luria-Bertani broth (LB) and defined lactate minimal medium 5'-end mRNA profiles of mid-log phase bacterial cells growing in LB or lactate medium were generated by next-generation sequencing.

2013-03-21 | E-GEOD-45312 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data