Project description:We isolated an efficient doxycycline degrading strain Chryseobacterium sp. WX1. To investigate gene expression patterns during doxycyclinedegradation by strain WX1, we conducted a comparative transcriptomic analysis using cultures of strain WX1 with and without doxycycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Chryseobacterium sp. WX1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-12 | GSE242785 | GEO

Flavobacterium bernardetii strain:F372

Project description:Flavobacterium bernardetii strain:F372 Genome sequencing and assembly

| PRJNA608177 | ENA

Flavobacterium bernardetii strain:F-408

Project description:Flavobacterium bernardetii strain: F-408 Genome sequencing and assembly

| PRJNA658099 | ENA

Proteomic data on the biodegradation of doxycycline by Chryseobacterium sp. WX1

Project description:In this study, we isolated a potent doxycycline-degrading bacterium, Chryseobacterium sp. WX1, from environmental samples. To elucidate the molecular mechanisms underlying doxycycline degradation by strain WX1, we assessed and interpreted the proteomic profiles of Chryseobacterium sp. WX1 under conditions both with and without doxycycline exposure.

2023-09-07 | PXD045182 | Pride

Citrobacter braakii strain:A3 | isolate:A3

Project description:Citrobacter braakii strain:A3 | isolate:A3 Genome sequencing and assembly

| PRJNA758056 | ENA

Asterionellopsis glacialis strain:A3

Project description:Asterionellopsis glacialis strain:A3 Genome sequencing and assembly

| PRJNA588343 | ENA

Colwellia echini strain:A3

Project description:Colwellia echini strain:A3 Genome sequencing and assembly

| PRJNA420580 | ENA