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RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [ChIP-Seq]

ABSTRACT: RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [ChIP-Seq]

PROVIDER: PRJNA759893 | ENA |

REPOSITORIES: ENA

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RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27

Project description:RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27

| PRJNA759890 | ENA

RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [RNA-Seq]

Project description:RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [RNA-Seq]

| PRJNA759892 | ENA

RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [ChIP-Seq]

Project description:ChIPseq analysis profiled changes in genomic landscape of H3K27me3, H3K27ac, SUZ12 , RBBP4, and HDAC1 in Rbbp4 mutant ESCs

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RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27 [RNA-Seq]

Project description:RNAseq anaysis detected dramatic changes in transcriptome due to Rbbp4 disruption

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RBBP4 modulates gene activity through acetylation and methylation of histone H3 lysine 27

Project description:This SuperSeries is composed of the SubSeries listed below.

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Chromatin immunoprecipitation to map nucleosomes and H3 lysine 14 acetylation in two unrelated strains of yeast

Project description:Nucleosome mapping and histone H3 lysine 14 acetylation chromatin immuno-precipitation in two unrelated strains of yeast (BY and RM).

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Histone H3 lysine 27 trimethylation of miRNA genes in HMEC and HMF

Project description:Normal cell type specific histone H3 lysine 27 trimethylation of miRNA genes. HMEC and HMF represent two distinct differentiated cell type present in mammary gland each with a distinct phenotype, a distinct epigenotype as well as distinct miRNA expression pattern. The aim of the study was to determine how epigenetic modifications including histone H3 lysine 27 trimethylation affect miRNA expression. Two cell types HMEC vs. HMF. Biological replicates: 3 pairs of HMEC-HMF of 3 distinct genotypes. Immunoprecipitation using anti-histone H3 trimethylated at lysine 27 (07-449, Millipore).

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Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells

Project description:Lysine 56 acetylation in the helical core of histone H3 opens yeast chromatin and enables histone gene transcription, DNA replication, DNA repair, and prevents epigenetic silencing. While K56Ac is globally abundant in yeast and flies its presence has been uncertain in mammals. We show here using mass spectrometry and genome wide analyses that K56Ac is present in human embryonic stem cells (hESCs) overlapping strongly at active and inactive promoters with the binding of the key regulators of pluripotency NANOG, SOX2 and OCT4. This includes also the canonical histone gene promoters and those for the hESC-specific microRNAs. K56Ac then relocates to developmental genes upon cellular differentiation. Thus K56Ac state more accurately reflects the epigenetic differences between hESCs and somatic cells than other active histone marks such as H3 K4 tri-methylation and K9 acetylation. These results suggest that K56Ac is involved in the human core transcriptional network of pluripotency. Genome wide location analysis ChIP-chip was performed in two human embryonic stem cell lines (HSF1 and HSF6) and two somatic cell lines (ARPE and BJ), for each of the following histone modifications: H3 K56Ac, H3 K9Ac, H3 K4me3 and H3 K27me3.

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Genome-wide analysis of histone H3 lysine 9 acetylation in Populus trichocarpa under drought stress

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2018-12-27 | GSE81047 | GEO

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