Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human colorectal tumor tissue: Tumor vs. histologically normal tissue

ABSTRACT: Human colorectal tumor tissue: Tumor vs. histologically normal tissue

PROVIDER: PRJNA763169 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Human colorectal tumor tissue: Tumor vs. histologically normal tissue

Project description:Transcriptional profiling of human colorectal cancer tissues comparing control from histologically normal tissue samples adjacent to the tumors. High throughput bioluminescence imaging, and PET were performed. The overall goal was to determine the differential expression of lncRNA and mRNA between tumor and match normal samples.

2021-09-17 | GSE184093 | GEO

Colorectal tumor DNA vs. normal control DNA

Project description:Genomic DNA samples were extracted from microdissected colorectal tumour tissue and then compared against normal DNA extracted from the peripheral blood from the same patients. 53 Normal/Tumor matched samples.

2012-10-25 | E-GEOD-41813 | biostudies-arrayexpress

RNA-seq data of 20 pairs of colorectal tumor with matched adjacent normal colorectal tissue

Project description:Next-generation sequencing (NGS) has revolutionized systems-based analysis of gene expression. The goals of this study is to compare gene expressions in colorectal tumor versus adjacent normal colorectal tissue.

2022-12-16 | GSE142279 | GEO

Gene expression analysis of colorectal tumors and matched adjacent non-tumor colorectal tissues.

Project description:We performed gene expression profiling of 26 colorectal tumors and matched histologically normal adjacent colonic tissue samples using the Illumina Ref-8 whole-genome expression BeadChip. We performed an integrated analysis of promoter DNA methylation and gene expression data to investigate the effects of DNA hypermethylation on gene expression. Total RNA was isolated from 26 pairs of fresh frozen colorectal tumor and matched adjacent non-tumor tissue samples. Their gene expression profiles were obtained using the Illumina Ref-8 whole-genome expression BeadChip (HumanRef-8 v3.0, 24,526 transcripts).

2011-06-03 | E-GEOD-25070 | biostudies-arrayexpress

Colorectal tumor DNA vs. normal control DNA

2012-10-25 | GSE41813 | GEO

Gene expression profile Colorectal Tumor and Normal tissue samples

Project description:Analysis of 4 pairs of colorectal cancer tissue and paraneoplastic tissue. The fresh frozen samples were obtained during surgical procedures. Results provide insight into molecular mechanisms underlying malignancy.

2016-12-01 | GSE75970 | GEO

Methylation profiling defines a widespread field defect in histologically normal prostate tissue associated with prostate cancer

Project description:We evaluated the presence of genome-wide epigenetic differences at 385,000 loci using Encode HG18 DNA methylation arrays in 5 non-tumor-associated (NTA) and 4 histologically undistinguished tumor-associated (TA) prostate tissues. We identified 615 probes to be differentially methylated (p<0.05) in TA prostate, with 537 (87%) hypomethylated and 78 (13%) hypermethylated. comparison of methylation in NTA to TA prostate tissue

2012-06-27 | E-GEOD-38982 | biostudies-arrayexpress

30 paired normal and tumor colorectal samples

Project description:Analysis of differentially regulated genes in patients normal and colorectal tumor samples. The aim of this study was to identify genes that were differentially up- or down-regulated in the tumor samples as compared to the normal colon tissue

2016-11-02 | GSE74602 | GEO

Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue

Project description:Analysis of 143 completely histologically-normal breast tissues resulted in the identification of a “malignancy risk” gene signature that may serve as a marker of subsequent risk of breast cancer development. Keywords: Tissue from breast cancer and adjacent regions

2009-03-09 | GSE10780 | GEO

Project description:Correlated metabolomic, genomic, and histologic phenotypes in histologically normal breast tissue

| PRJNA437646 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data