Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A transcriptome study of a non-shedding fruit Elaeis oleifera palm

ABSTRACT: A transcriptome study of a non-shedding fruit Elaeis oleifera palm

PROVIDER: PRJNA773955 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

A transcriptome study of a non-shedding fruit Elaeis oleifera palm

Project description:A comparative transcriptome analysis was performed to compare the fruit AZs of the non-shedding E. oleifera variant and from an individual of the same progeny that sheds its ripe fruit normally. The study provides evidence for widespread perturbation to gene expression in the AZ of the non-shedding variant, compared to the normal fruit-shedding control, and allows insight into abscission related functions.

2021-10-28 | GSE186050 | GEO

Oil Palm Fruit Abscission Zone Transcriptome

Project description:To determine the mechanisms of fleshy fruit abscission of the monocot oil palm (Elaeis guineensis Jacq.) compared with other abscission systems, we performed multi-scale comparative transcriptome analyses on fruit targeting the developing primary AZ and adjacent tissues. Combining between-tissue developmental comparisons with exogenous ethylene treatments, and naturally occurring abscission in the field, RNAseq analysis revealed a robust core set of 168 genes with differentially regulated expression, spatially associated with the ripe fruit AZ, and temporally restricted to the abscission timing. The expression of a set of candidate genes was validated by qRT-PCR in the fruit AZ of a natural oil palm variant with blocked fruit abscission, which provides evidence for their functions during abscission. Our results substantiate the conservation of gene function between dicot dry fruit dehiscence and monocot fleshy fruit abscission. The study also revealed major metabolic transitions occur in the AZ during abscission, including key senescence marker genes and transcriptional regulators, in addition to genes involved in nutrient recycling and reallocation, alternative routes for energy supply and adaptation to oxidative stress. The study provides the first reference transcriptome of a monocot fleshy fruit abscission zone and provides insight into the mechanisms underlying abscission by identifying key genes with functional roles and processes, including metabolic transitions, cell wall modifications, signalling, stress adaptations and transcriptional regulation, that occur during ripe fruit abscission of the monocot oil palm. The transcriptome data comprises an original reference and resource useful towards understanding the evolutionary basis of this fundamental plant process.

2021-02-08 | GSE166314 | GEO

Elaeis oleifera

Project description:Elaeis oleifera overview

| PRJNA237673 | ENA

Elaeis oleifera

Project description:Elaeis oleifera Genome sequencing and assembly

| PRJNA183707 | ENA

A Non-Shedding Fruit <i>Elaeis oleifera</i> Palm Reveals Perturbations to Hormone Signaling, ROS Homeostasis, and Hemicellulose Metabolism.

Project description: Not available

| S-EPMC8621672 | biostudies-literature

Proteome profiles of oil palm fruit mesocarp

Project description:Proteome profiles of oil palm mesocarp from different stages of fruit development were analysed using two-dimensional gel electrophoresis (2DE) and the significantly changed protein were identified using by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF/TOF) and functionally classified using ontology analysis.

2018-11-02 | PXD009579 | Pride

Elaeis oleifera isolate:Manicore_A41-06-04

Project description:Elaeis oleifera, Manicore Family, Whole Genome sequencing and assembly.

| PRJNA319554 | ENA

Oil Palm Fruit Abscission Zone Transcriptome

Project description:Oil Palm Fruit Abscission Zone Transcriptome

| PRJNA700429 | ENA

Elaeis oleifera

Project description:Analyses of Hypomethylated Oil Palm Gene Space

| PRJNA217846 | ENA

Gene expression profiles of oil palm leaves from different oil yields and genetic population: Transcriptomic dataset

Project description:Oil palm (Elaeis guineensis Jacq.) is one of the most important oil-producing crops in the world. However, the demand for oil from this crop will increase in the future. A comparative gene expression profile of the oil palm leaves was needed in order to understand the key factors that influence the oil production. Here, we reported an RNA-seq dataset from three different oil yields and three different genetic populations of oil palm. All raw sequencing reads were obtained from an Illumina NextSeq 500 platform. We also provide a list of the genes and their expression levels resulting from the RNA-sequencing. This transcriptomic dataset will provide a valuable resource for increasing oil yield.

2023-01-10 | GSE222528 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data