Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hi-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

ABSTRACT: Hi-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

PROVIDER: PRJNA828615 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Capture-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

Project description:Capture-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

| PRJNA830858 | ENA

Single-cell RNA-seq (Drop-seq) of MGE, CGE and LGE of E13.5 (MGE) and E14.5 (CGE, LGE) mouse embryos

Project description:Single-cell RNA-seq (Drop-seq) of MGE, CGE and LGE of E13.5 (MGE) and E14.5 (CGE, LGE) mouse embryos

| PRJNA407881 | ENA

Single nuclei ATAC-seq (10X Genomics Chromium) of MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

Project description:Single nuclei ATAC-seq (10X Genomics Chromium) of MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

| PRJNA702790 | ENA

Single cell RNA-seq (10X Genomics Chromium) of MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

Project description:Single cell RNA-seq (10X Genomics Chromium) of MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

| PRJNA702677 | ENA

Hi-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

Project description:While comparative genetic analysis has been performed between distinct regions of the embryonic forebrain, a comprehensive characterization of differential epigenomic organization has not been performed. We collected single-cell chromatin accessibility profiles from four distinct neurogenic regions of the embryonic mouse forebrain using single nuclei ATAC-Seq (snATAC-Seq). We identified thousands of differentially accessible peaks, many restricted to distinct progenitor cell types or brain regions. We integrated snATAC-Seq and single cell transcriptome data to characterize changes of chromatin accessibility at enhancers and promoters that were tightly coupled to transcript abundance. Multi-modal integration of histone modifications (CUT&Tag and CUT&RUN), promoter-enhancer interactions (Capture-C) and high-order chromatin structure (Hi-C) extended these initial observations. This dataset reveals a diverse chromatin landscape with region-specific regulatory mechanisms and genomic interactions in distinct neurogenic regions of the embryonic mouse brain and represents an extensive public resource of a ‘ground truth’ epigenomic landscape at this critical stage of neurogenesis.

2022-07-01 | GSE201186 | GEO

Single-cell RNA-seq (10X Genomics Chromium) of LGE, MGE, CGE, and Cortex from mouse embryonic forebrain

Project description:Single-cell RNA-seq (10X Genomics Chromium) of LGE, MGE, CGE, and Cortex from mouse embryonic forebrain

| PRJNA787611 | ENA

Capture-C in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

2022-07-01 | GSE201317 | GEO

CUT&RUN (H3K27Ac3) in MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

2022-07-01 | GSE201400 | GEO

MGE, CGE, LGE and cortical regions from mouse embryonic forebrain

Project description:This SuperSeries is composed of the SubSeries listed below.

2022-07-01 | GSE201494 | GEO

CUT&Tag (H3K27me3) in MGE, CGE, LGE and cortical regions from mouse (C57BL/6J) embryonic forebrain