Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Cyanobacteria bloom from Yahuarcocha, Ecuador 2021

ABSTRACT: Cyanobacteria bloom from Yahuarcocha, Ecuador 2021 Metagenomic assembly

PROVIDER: PRJNA845206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Cyanobacteria

Project description:Barcoding to identify toxigenic cyanobacteria driving a multi-toxin bloom

| PRJNA474081 | ENA

Effects of Bloom RNAi on Transcriptomes in A549 Cells

Project description:We profiled transcriptomes in human lung cancer cell line A549 when the expression of Bloom was knockdown by the siRNA specific to Bloom.

2018-09-06 | GSE119512 | GEO

Cyanobacteria

Project description:Cyanobacteria Genome sequencing and assembly

| PRJNA616171 | ENA

Cyanobacteria

Project description:Cyanobacteria Genome sequencing and assembly

| PRJNA448332 | ENA

Cyanobacteria

Project description:Cyanobacteria overview

| PRJNA187002 | ENA

Cyanobacterial bloom

Project description:Cyanobacterial bloom Other

| PRJNA657047 | ENA

Grafting changed silicon metabolism and expression of bloom-forming related genes of cucumber pericarp

Project description:Cucumber (Cucumis sativus L.) is an economically important vegetable cultivated all over the world. Grafting can produce bloomless or sparse-bloom cucumber, which is welcomed by increasing consumers. Bloom granule is tine glandular hair, which is hard and rare studied on its formation and related genes. Mutifunctional RNA-seq is a recently developed analytical approach for transcriptome profiling via high-throughput sequencing and has been recently applied to a wide variety of organisms, which provide us reliable technical means detect bloom formation and related genes. In this study, we chose a cucumber inbred line (Shannong No.5) and two pumpkin rootstock lines as materials, and constructed four tested cucumbers, grew plants in “Yamazaki cucumber nutrient solution formula” prepared by deionized water, treated plants with or without 1.7mM potassium silicate 2 hours before collecting pericarp. Each treatment were duplicated twice.16 cDNA libraries were constructed from pericarp of a cucumber inbred line (own-rooted cucumber), C/C (self-grafted cucumber), M/C (More bloom, cucumber grafted onto “3225” rootstock) and L/C(Less bloom, cucumber grafted onto “3212” rootstock). We obtained 17,215,769~17,529,047 high quality reads, and 18,804~19,358 genes from each sample. All reads can be mapped to the cucumber genome (Version 2). By RPKM comparing, we got 38 comparing combinations with differentially expressed genes (DEGs), obtained 38 significantly expressed combinations by FDR≤0.001 and the absolute value of log2Ratio≥1 as the thresholds. These results suggest that there are many differences and genes expression mode among effects of grafting or added silicon. This study addresses a preliminary analysis and offers a foundation for future genomic research in the bloom formation of cucumber.

2020-04-02 | GSE79829 | GEO

Cyanobacteria bacterium

Project description:Cyanobacteria bacterium overview

| PRJNA586990 | ENA

Cyanobacteria phage

Project description:Cyanobacteria phage Metagenome

| PRJNA522368 | ENA

bloom euk

Project description:bloom euk Raw sequence reads

| PRJNA431109 | ENA