Danio rerio
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA95455 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Comparison of expression profile between banp mutant and wildtype sibling.
| PRJDB12134 | ENA
Project description:Sequencing of Danio rerio embryo from wildtype and microRNA treated animals
| PRJNA407087 | ENA
Project description:Comparison of expression data between control and Ovo1 morphant zebrafish embryos
| PRJNA126199 | ENA
Project description:Purpose: Construction of 3D zebrafish spatial transcriptomics data for studying the establishment of AP axis. Methods: We performed serial bulk RNA-seq data of zebrafish embryo at three development points. Using the published spatial transcriptomics data as references, we implemented Palette to infer spatial gene expression from bulk RNA-seq data and constructed 3D embryonic spatial transcriptomics. The constructed 3D transcriptomics data was then projected on zebrafish embryo images with 3D coordinates, establishing a spatial gene expression atlas named Danio rerio Asymmetrical Maps (DreAM). Results: DreAM provides a powerful platform for visualizing gene expression patterns on zebrafish morphology and investigating spatial cell-cell interactions. Conclusions: Our work used DreAM to explore the establishment of anteroposterior (AP) axis, and identified multiple morphogen gradients that played essential roles in determining cell AP positions. Finally, we difined a hox score, and comprehensively demonstrated the spatial collinearity of Hox genes at single-cell resolution during development.
2024-04-08 | GSE262578 | GEO
Project description:Gene expression at four stages of the developing zebrafish embryo
| PRJNA187332 | ENA
Project description:Comparison of gene expression profiles from Danio rerio skin of wiltype (AB) and homozygote/heterozygote tert mutant phenotypes (AB tert(-/-), AB tert(+/)). The RNA-seq data comprises 3 groups. Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)
2021-10-19 | GSE102434 | GEO
Project description:Expression data from 48 hpf WT and mne mutant zebrafish
| PRJNA371546 | ENA
Project description:Sequencing of Danio rerio skin from wildtype and two tert mutant phenotypes (JenAge)
| PRJNA397736 | ENA
Project description:Gene expression profiles of uhrf1 mutant zebrafish
| PRJNA239358 | ENA
Project description:Salmonella typhimurium infection of zebrafish embryo
| PRJNA112491 | ENA