Proteomics

Dataset Information

0

A.thaliana - Whole organism, ms/ms data, SC (Castellana,pnas,2008)


ABSTRACT: abundance based on Spectral counting, MS/MS data, Interaction consistency score: 16.7, Coverage: 66

ORGANISM(S): 3702

SUBMITTER: Christian von Mering  

PROVIDER: 159169384 | PAXDB | 2008

REPOSITORIES: PAXDB

Dataset's files

Source:
Action DRS
bioprojects-abundance-files-v4.0.zip Other
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Publications

Discovery and revision of Arabidopsis genes by proteogenomics.

Castellana Natalie E NE   Payne Samuel H SH   Shen Zhouxin Z   Stanke Mario M   Bafna Vineet V   Briggs Steven P SP  

Proceedings of the National Academy of Sciences of the United States of America 20081219 52


Gene annotation underpins genome science. Most often protein coding sequence is inferred from the genome based on transcript evidence and computational predictions. While generally correct, gene models suffer from errors in reading frame, exon border definition, and exon identification. To ascertain the error rate of Arabidopsis thaliana gene models, we isolated proteins from a sample of Arabidopsis tissues and determined the amino acid sequences of 144,079 distinct peptides by tandem mass spect  ...[more]

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