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M.musculus - Whole organism, Empai (Menschaert,mcp,2013)

ABSTRACT: abundance based on MAPPED_BY_AUTHORS, emPAI, Interaction consistency score: 3.6, Coverage: 13

ORGANISM(S): 10090

SUBMITTER: Christian von Mering

PROVIDER: 61138479 | PAXDB | 2013

REPOSITORIES: PAXDB

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Publications

Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events.

Menschaert Gerben G Van Criekinge Wim W Notelaers Tineke T Koch Alexander A Crappé Jeroen J Gevaert Kris K Van Damme Petra P

Molecular & cellular proteomics : MCP 20130221 7

An increasing number of studies involve integrative analysis of gene and protein expression data, taking advantage of new technologies such as next-generation transcriptome sequencing and highly sensitive mass spectrometry (MS) instrumentation. Recently, a strategy, termed ribosome profiling (or RIBO-seq), based on deep sequencing of ribosome-protected mRNA fragments, indirectly monitoring protein synthesis, has been described. We devised a proteogenomic approach constructing a custom protein se ...[more]

PMID: 23429522

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