Dataset Information
A.niger Proteomics JGI Genome Annotation HUB_MAN C4PR_LIV
Ontology highlight
ABSTRACT:
INSTRUMENT(S): instrument model, Waters instrument model
ORGANISM(S): Aspergillus Niger
SUBMITTER: 
James Wright
PROVIDER: PRD000067 | Pride | 2010-01-27
REPOSITORIES: Pride
Publications
Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger.
BMC genomics 20090204
<h4>Background</h4>Proteomic data is a potentially rich, but arguably unexploited, data source for genome annotation. Peptide identifications from tandem mass spectrometry provide prima facie evidence for gene predictions and can discriminate over a set of candidate gene models. Here we apply this to the recently sequenced Aspergillus niger fungal genome from the Joint Genome Institutes (JGI) and another predicted protein set from another A.niger sequence. Tandem mass spectra (MS/MS) were acquir ...[more]
