Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plant diseases "Esca proper and apoplexy"

ABSTRACT: Physiological changes in green stems of Vitis vinifera L. cv.Chardonnay in response to esca proper and apoplexy revealed by proteomic and transcriptomic analyses

INSTRUMENT(S): Waters Synapt G1, Bruker Ion Trap amaZon

ORGANISM(S): Viridiplantae

SUBMITTER: Tchilabalo Dilezitoko ALAYI

LAB HEAD: Tchilabalo Dilezitoko ALAYI

PROVIDER: PRD000582 | Pride | 2012-02-01

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PRIDE_Exp_Complete_Ac_19645.pride.mgf.gz	Mgf
	PRIDE_Exp_Complete_Ac_19645.pride.mztab.gz	Mztab
	PRIDE_Exp_Complete_Ac_19645.xml.gz	Xml
	PRIDE_Exp_Complete_Ac_19646.pride.mgf.gz	Mgf
	PRIDE_Exp_Complete_Ac_19646.pride.mztab.gz	Mztab

Items per page:

1 - 5 of 6

Publications

Physiological changes in green stems of Vitis vinifera L. cv. Chardonnay in response to esca proper and apoplexy revealed by proteomic and transcriptomic analyses.

Spagnolo Alessandro A Magnin-Robert Maryline M Alayi Tchilabalo Dilezitoko TD Cilindre Clara C Mercier Laurence L Schaeffer-Reiss Christine C Van Dorsselaer Alain A Clément Christophe C Fontaine Florence F

Journal of proteome research 20111129 1

Among grapevine trunk diseases, esca proper and apoplexy commonly represent a threat for viticulture worldwide. To retrieve further information about the mechanisms activated in apoplectic and esca proper-affected plants, a two-dimensional gel electrophoresis (2-DE) based analysis was conducted on green stems from 26-year-old standing vines. Symptomatic and asymptomatic stems from both apoplectic (A) and esca proper-affected (E) plants compared to control (without visual symptom since 10 years) ...[more]

PMID: 22050466

Similar Datasets

Esca proper and apoplexy on trunk wood of Vitis vinifera L. cv.Chardonnay

Project description:Physiological changes in trunk wood of Vitis vinifera L. cv. Chardonnay in response to esca proper and apoplexy revealed by proteomic and transcriptomic analyses

2014-06-25 | PXD000015 | Pride

The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program

2012-09-10 | GSE36128 | GEO

The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program

Project description:The first genome-wide transcriptomic atlas of grapevine (Vitis vinifera) is based on 54 diverse samples expressing ~93% of predicted grapevine genes. Pollen and senescent leaves have unique transcriptomes but microarray analysis grouped all other samples into vegetative/green or mature/woody categories based on maturity rather than organ identity. This fundamental transcriptome reprograming during maturation was highlighted by three distinct statistical approaches supported by gene coexpression analysis. The shift to the mature/woody developmental program results from the reiterative coactivation of pathways that are largely inactive in vegetative/green tissues, often involving the coregulation of neighboring genes and global regulation based on codon preference. A total of 54 grapevine samples, covering most of the Grape organs at different stages, were collected. Three biological replicates were taken for each sample, resulting in a total of 162 observations. The collected plant organs were: bud, inflorescence, tendril, leaf, stem, root, developing berry, withering berry, seed, rachis, anther, carpel, petal, pollen, and seedling.

2012-09-10 | E-GEOD-36128 | biostudies-arrayexpress

V. vinifera 'Cabernet sauvignon' and V. aestivalis 'Norton' innoculated with Erysiphe necator conidiospores

Project description:we analyzed pathogen-induced changes in the transcriptome of Vitis vinifera ‘Cabernet sauvignon’ and Vitis aestivalis ‘Norton’ by conducting a large-scale study to measure transcript abundance at 0, 4, 8, 12, 24, and 48 hours post-treatment in conidiospore- and mock-inoculated leaves using Affymetrix GeneChip Vitis vinifera Genome Array Keywords: time course

2007-11-29 | GSE6404 | GEO

microRNA-target RNA pairs revealed by Parallel analysis of RNA ends in Vitis vinifera

Project description:Vitis vinifera RNA degradome

2010-04-29 | GSE18406 | GEO

High-throughput sequencing of small RNAs in Vitis vinifera

Project description:Vitis vinifera endogenous small RNAs

2010-04-29 | GSE18405 | GEO

Grape skin transcriptome to reveal genes related with resveratrol accumulation

Project description:Methods:transcriptomes of the different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were analyzed using Illumina Hiseq 2500. The sequence reads that passed quality filters were analyzed: TopHat followed by Cufflinks. mRNA profiles of different development stages of Vitis vinifera cv. Cabernet Sauvignon and Vitis quinquangularis accession Danfeng-2 were generated by deep sequencing, in triplicate, using Illumina Hiseq 2500.

2015-12-23 | E-GEOD-76256 | biostudies-arrayexpress

Fennell Grapevine Dormancy - Understanding transduction of the photoperiod signal

Project description:To begin understanding transduction of the photoperiod signal, Vitis riparia Michx. (PI588259) grapevines that had grown for 35 days in long photoperiod (long day, LD, 15h) were subjected to either continued LD or a short photoperiod (short day, SD, 13h) treatment. Shoot tips (4-node shoot terminals) were collected from each treatment at 7 and 28 days of LD and SD for proteomic analysis via two-dimensional (2D) gel electrophoresis. The peptides were identified using MALDI-TOF_TOF mass spectrometer after trypsin digestion. A master gel was made and mapped with all p roteins from both photoperiod treatments. The proteins were identified by matching the peptide sequences against the 12X Vitis vinifera grape genome in NCBI. This study was funded in part by NSF grant DBI064755 and the South Dakota Agriculture Experiment Station.

2011-01-26 | PRD000377 | Pride

Grape Bud Dormancy -Vitis vinifera

Project description:Bud endodormancy induction response of two genotypes (Seyval, a hybrid white wine grape and Vitis riparia, PI588259, a native North American grape species) was compared under long (15 h) and short (13 h) photoperiods. Proteins were extracted from both genotypes for all time points and experimental conditions. The proteins were separaed by 2D-PAGE, trypsin digested, and the peptides identified with a MALDI-TOF-TOF mass spectrometer. A master gel was made and mapped with all proteins from both genotypes. The proteins were identified by matching the peptide sequences against the 8X Vitis vinifera grape genome in NCBI. This study was funded by NSF grant DBI064755 and is the result of a collaboration between Dr. Anne Fennell at South Dakota State University and Dr. Grant R. Cramer at the University of Nevada, Reno.

2010-08-09 | PRD000169 | Pride

Grape skin transcriptome to reveal genes related with resveratrol accumulation

2015-12-23 | GSE76256 | GEO