Proteomics

Dataset Information

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Integrated metagenomic and metaproteomic analyses of marine biofilm communities


ABSTRACT: Metagenomic and metaproteomic analyses were utilized to determine the composition and function of complex air-water interface biofilms sampled from the hulls of two ships that were deployed in different geographic locations.

INSTRUMENT(S): QSTAR

ORGANISM(S): biofilm metagenome  

TISSUE(S): Tissue Not Applicable To Dataset

DISEASE(S): Not Available

SUBMITTER: Dasha Leary  

LAB HEAD: Dasha Leary

PROVIDER: PXD000961 | Pride | 2014-10-13

REPOSITORIES: pride

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Publications

Integrated metagenomic and metaproteomic analyses of marine biofilm communities.

Leary Dagmar H DH   Li Robert W RW   Hamdan Leila J LJ   Hervey W Judson WJ   Lebedev Nikolai N   Wang Zheng Z   Deschamps Jeffrey R JR   Kusterbeck Anne W AW   Vora Gary J GJ  

Biofouling 20140101 10


Metagenomic and metaproteomic analyses were utilized to determine the composition and function of complex air-water interface biofilms sampled from the hulls of two US Navy destroyers. Prokaryotic community analyses using PhyloChip-based 16S rDNA profiling revealed two significantly different and taxonomically rich biofilm communities (6,942 taxa) in which the majority of unique taxa were ascribed to members of the Gammaproteobacteria, Alphaproteobacteria and Clostridia. Although metagenomic seq  ...[more]

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