Dataset Information

DeMix:efficient identification of co-fragmented peptides

ABSTRACT: A data analysis workflow with a simple deconvolution method based on high resolution data-dependent tandem mass spectrometry.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Hela Cell

SUBMITTER: Bo Zhang

LAB HEAD: Roman A. Zubarev

PROVIDER: PXD000999 | Pride | 2014-08-14

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	20131106_Q2_SDC_120MIN_HELA1.raw	Raw
	20131106_Q2_SDC_120MIN_HELA2.raw	Raw
	20131106_Q2_SDC_120MIN_HELA3.raw	Raw
	20131202_hela1_120min_131202214433.raw	Raw
	20131202_hela1_120min_2MZ.raw	Raw

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Publications

DeMix workflow for efficient identification of cofragmented peptides in high resolution data-dependent tandem mass spectrometry.

Zhang Bo B Pirmoradian Mohammad M Chernobrovkin Alexey A Zubarev Roman A RA

Molecular & cellular proteomics : MCP 20140806 11

Based on conventional data-dependent acquisition strategy of shotgun proteomics, we present a new workflow DeMix, which significantly increases the efficiency of peptide identification for in-depth shotgun analysis of complex proteomes. Capitalizing on the high resolution and mass accuracy of Orbitrap-based tandem mass spectrometry, we developed a simple deconvolution method of "cloning" chimeric tandem spectra for cofragmented peptides. Additional to a database search, a simple rescoring scheme ...[more]

PMID: 25100859

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