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Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acidic environments

ABSTRACT: Proteins from acid mine drainage microbial communities were extracted, trypsine digested and identified with LC-MS/MS analysis.

OTHER RELATED OMICS DATASETS IN: PRJNA207869PRJNA248226

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Uncultured Microorganism

SUBMITTER: Zhou Li

LAB HEAD: Chongle Pan

PROVIDER: PXD003541 | Pride | 2016-03-15

REPOSITORIES: Pride

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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage.

Mosier Annika C AC Miller Christopher S CS Frischkorn Kyle R KR Ohm Robin A RA Li Zhou Z LaButti Kurt K Lapidus Alla A Lipzen Anna A Chen Cindy C Johnson Jenifer J Lindquist Erika A EA Pan Chongle C Hettich Robert L RL Grigoriev Igor V IV Singer Steven W SW Banfield Jillian F JF

Frontiers in microbiology 20160303

The ecosystem roles of fungi have been extensively studied by targeting one organism and/or biological process at a time, but the full metabolic potential of fungi has rarely been captured in an environmental context. We hypothesized that fungal genome sequences could be assembled directly from the environment using metagenomics and that transcriptomics and proteomics could simultaneously reveal metabolic differentiation across habitats. We reconstructed the near-complete 27 Mbp genome of a fila ...[more]

PMID: 26973616

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