Proteomics

Dataset Information

0

Comparative genomics reveals high biological diversity and specific adaptations in the fungal genus Aspergillus


ABSTRACT: The project compares the genomes of multiple Aspergillus species. In particular, the genes involved in the degradation of plant-derived biomass have been analyzed. As well, the extracellular proteins produced by the fungi during the utilization of sugar beet pulp and wheat bran were examined by LC-MS/MS. Results show that closely related species can deploy different enzyme mixtures in the hydrolysis of plant-derived biomass. These results imply that efficient hydrolysis of biomass can be achieved by combining enzyme mixtures from two or more fungi.

INSTRUMENT(S): LTQ Orbitrap Velos

ORGANISM(S): Aspergillus Wentii Aspergillus Foetidus Var. Acidus Aspergillus Versicolor Aspergillus Zonatus Aspergillus Aculeatus Atcc 16872 Aspergillus Carbonarius Item 5010 Aspergillus Tubingensis Aspergillus Brasiliensis Aspergillus Sydowii

TISSUE(S): Fungal Cell

SUBMITTER: Marcos Di Falco  

LAB HEAD: Ronald de Vries

PROVIDER: PXD005563 | Pride | 2018-10-26

REPOSITORIES: Pride

altmetric image

Publications

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

de Vries Ronald P RP   Riley Robert R   Wiebenga Ad A   Aguilar-Osorio Guillermo G   Amillis Sotiris S   Uchima Cristiane Akemi CA   Anderluh Gregor G   Asadollahi Mojtaba M   Askin Marion M   Barry Kerrie K   Battaglia Evy E   Bayram Özgür Ö   Benocci Tiziano T   Braus-Stromeyer Susanna A SA   Caldana Camila C   Cánovas David D   Cerqueira Gustavo C GC   Chen Fusheng F   Chen Wanping W   Choi Cindy C   Clum Alicia A   Dos Santos Renato Augusto Corrêa RA   Damásio André Ricardo de Lima AR   Diallinas George G   Emri Tamás T   Fekete Erzsébet E   Flipphi Michel M   Freyberg Susanne S   Gallo Antonia A   Gournas Christos C   Habgood Rob R   Hainaut Matthieu M   Harispe María Laura ML   Henrissat Bernard B   Hildén Kristiina S KS   Hope Ryan R   Hossain Abeer A   Karabika Eugenia E   Karaffa Levente L   Karányi Zsolt Z   Kraševec Nada N   Kuo Alan A   Kusch Harald H   LaButti Kurt K   Lagendijk Ellen L EL   Lapidus Alla A   Levasseur Anthony A   Lindquist Erika E   Lipzen Anna A   Logrieco Antonio F AF   MacCabe Andrew A   Mäkelä Miia R MR   Malavazi Iran I   Melin Petter P   Meyer Vera V   Mielnichuk Natalia N   Miskei Márton M   Molnár Ákos P ÁP   Mulé Giuseppina G   Ngan Chew Yee CY   Orejas Margarita M   Orosz Erzsébet E   Ouedraogo Jean Paul JP   Overkamp Karin M KM   Park Hee-Soo HS   Perrone Giancarlo G   Piumi Francois F   Punt Peter J PJ   Ram Arthur F J AF   Ramón Ana A   Rauscher Stefan S   Record Eric E   Riaño-Pachón Diego Mauricio DM   Robert Vincent V   Röhrig Julian J   Ruller Roberto R   Salamov Asaf A   Salih Nadhira S NS   Samson Rob A RA   Sándor Erzsébet E   Sanguinetti Manuel M   Schütze Tabea T   Sepčić Kristina K   Shelest Ekaterina E   Sherlock Gavin G   Sophianopoulou Vicky V   Squina Fabio M FM   Sun Hui H   Susca Antonia A   Todd Richard B RB   Tsang Adrian A   Unkles Shiela E SE   van de Wiele Nathalie N   van Rossen-Uffink Diana D   Oliveira Juliana Velasco de Castro JV   Vesth Tammi C TC   Visser Jaap J   Yu Jae-Hyuk JH   Zhou Miaomiao M   Andersen Mikael R MR   Archer David B DB   Baker Scott E SE   Benoit Isabelle I   Brakhage Axel A AA   Braus Gerhard H GH   Fischer Reinhard R   Frisvad Jens C JC   Goldman Gustavo H GH   Houbraken Jos J   Oakley Berl B   Pócsi István I   Scazzocchio Claudio C   Seiboth Bernhard B   vanKuyk Patricia A PA   Wortman Jennifer J   Dyer Paul S PS   Grigoriev Igor V IV  

Genome biology 20170214 1


<h4>Background</h4>The fungal genus Aspergillus is of critical importance to humankind. Species include those with industrial applications, important pathogens of humans, animals and crops, a source of potent carcinogenic contaminants of food, and an important genetic model. The genome sequences of eight aspergilli have already been explored to investigate aspects of fungal biology, raising questions about evolution and specialization within this genus.<h4>Results</h4>We have generated genome se  ...[more]

Similar Datasets

2015-11-22 | E-GEOD-55086 | biostudies-arrayexpress
2021-06-28 | PXD023338 | Pride
2015-04-13 | E-GEOD-62284 | biostudies-arrayexpress
2022-05-09 | PXD031886 | Pride
2022-05-09 | PXD031881 | Pride
2020-05-15 | PXD011598 | Pride
2014-08-22 | E-GEOD-57315 | biostudies-arrayexpress
2011-08-08 | E-GEOD-27323 | biostudies-arrayexpress
2018-07-01 | E-MTAB-6939 | biostudies-arrayexpress
2013-11-27 | E-GEOD-42692 | biostudies-arrayexpress