Dataset Information
Proteomics of 24 bacterial strains from an artificial microbiota reference to evaluate metaproteomics
Ontology highlight
ABSTRACT:
INSTRUMENT(S): LTQ Orbitrap
ORGANISM(S): Vibrio Harveyi Nbrc 15634 = Atcc 14126 Bordetella Parapertussis Bpp5 Roseobacter Denitrificans (strain Atcc 33942 / Och 114) (erythrobacter Sp. (strain Och 114)) (roseobacter Denitrificans) Salmonella Bongori Nctc 12419 Kineococcus Radiotolerans Srs30216 = Atcc Baa-149 Marivirga Tractuosa Dsm 4126 Ruegeria Pomeroyi Dss-3 Cellulophaga Lytica Dsm 7489 Deinococcus Proteolyticus Mrp Staphylococcus Carnosus Subsp. Carnosus Tm300 Bacillus Thuringiensis Serovar Berliner Atcc 10792 Deinococcus Deserti (strain Vcd115 / Dsm 17065 / Lmg 22923) Pseudopedobacter Saltans Dsm 12145 Oceanibulbus Indolifex Hel-45 Phaeobacter Gallaeciensis (strain Atcc 700781 / Dsm 17395 / Cip 105210 / Nbrc 16654 / Bs107) (roseobacter Gallaeciensis) Sphingomonas Wittichii Rw1 Bacillus Cereus (strain Atcc 14579 / Dsm 31) Bacillus Subtilis Subsp. Spizizenii Atcc 6633 Deinococcus Geothermalis Dsm 11300 Sagittula Stellata E-37 Pseudomonas Putida Kt2440 Shigella Flexneri 2a Str. 2457t Roseovarius Nubinhibens Ism Oceanicola Granulosus Htcc2516
SUBMITTER: 
Jean ARMENGAUD
LAB HEAD: Jean ARMENGAUD
PROVIDER: PXD005728 | Pride | 2023-06-02
REPOSITORIES: Pride
Publications
Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.
International journal of molecular sciences 20230511 10
Correct identification of the microorganisms present in a complex sample is a crucial issue. Proteotyping based on tandem mass spectrometry can help establish an inventory of organisms present in a sample. Evaluation of bioinformatics strategies and tools for mining the recorded datasets is essential to establish confidence in the results obtained and to improve these pipelines in terms of sensitivity and accuracy. Here, we propose several tandem mass spectrometry datasets recorded on an artific ...[more]
