Ontology highlight
ABSTRACT:
INSTRUMENT(S): LTQ Orbitrap Velos
ORGANISM(S): Algae Metagenome
SUBMITTER: Frank Unfried
LAB HEAD: Rudolf Amann
PROVIDER: PXD008238 | Pride | 2018-08-16
REPOSITORIES: Pride
Krüger Karen K Chafee Meghan M Ben Francis T T Glavina Del Rio Tijana T Becher Dörte D Schweder Thomas T Amann Rudolf I RI Teeling Hanno H
The ISME journal 20190717 11
We investigated Bacteroidetes during spring algae blooms in the southern North Sea in 2010-2012 using a time series of 38 deeply sequenced metagenomes. Initial partitioning yielded 6455 bins, from which we extracted 3101 metagenome-assembled genomes (MAGs) including 1286 Bacteroidetes MAGs covering ~120 mostly uncultivated species. We identified 13 dominant, recurrent Bacteroidetes clades carrying a restricted set of conserved polysaccharide utilization loci (PULs) that likely mediate the bulk o ...[more]