Proteomics

Dataset Information

Proteomic characterization of CD34+ CD123+ stem cells from patients with acute myeloid leukemia


ABSTRACT: The comparative characterization of hematopoietic stem cells from healthy stem cell donors and patients with acute myeloid leukemia on a proteome level has the potential to reveal differentially regulated proteins which might be candidates for specific immunotherapy target molecules. Exemplarily, we analyzed the proteome of the cytosolic and the membrane fraction of CD34 and CD123 co-expressing FACS-sorted leukemic progenitors from five patients with acute myeloid leukemia employing mass spectrometry. As a reference, CD34+CD123+ normal hematopoietic progenitor cells from five healthy stem cell donors were analyzed. In this TMT 10-plex labeling based approach 2068 proteins were identified with 256 proteins differentially regulated in one or both cellular compartments. This study demonstrates the feasibility of a mass spectrometry based proteomic approach to detect differentially expressed proteins in two compartment fractions of leukemic stem cells as compared to their healthy stem cell counterparts.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Blood Cell, Stem Cell, Blood

DISEASE(S): Acute Leukemia

SUBMITTER: Johannes R. Schmidt  

LAB HEAD: Martin von Bergen

PROVIDER: PXD008378 | Pride | 2018-02-19

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
AML.msf Msf
AML.pep.xml Pepxml
AML_TMT10_plex_cytosolic_profile_NCE38.raw Raw
AML_TMT10_plex_membrane_profile_NCE38.raw Raw
PXD008378_community_annotated.sdrf.tsv Tabular
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