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Metaproteomic data of maize rhizosphere

ABSTRACT: We present metaproteome data from maize rhizosphere from sodic soil. Isolation of proteome from maize rhizosphere collected from Experimental Farm, ICAR-IISS, Mau, India was done with the standardized protocol at our laboratory and metaproteome analysis was done with the standardized pipepline. In total 696 proteins with different functions representing 245 genus and 395 species were identified. The proteome data provides direct evidence on the biological processes in soil ecosystem and is the first reported reference data from maize rhizosphere.

INSTRUMENT(S): Synapt MS

ORGANISM(S): Rhizosphere Soil Bacteria Ensemble

SUBMITTER: Renu S

LAB HEAD: Dr Renu

PROVIDER: PXD014519 | Pride | 2019-10-08

REPOSITORIES: Pride

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Metaproteomic data of maize rhizosphere for deciphering functional diversity.

Renu Gupta Sanjay Kumar SK Rai Ashutosh Kumar AK Sarim Khan Mohd KM Sharma Anu A Budhlakoti Neeraj N Arora Devendra D Verma Dhiraj Kumar DK Singh Dhananjaya P DP

Data in brief 20190927

Metaproteomics is a powerful tool for obtaining data on all proteins recovered directly from environmental samples at a given time. It provides a direct evidence of functional diversity and structure among microbiota present in niches and significant insights into microbial activity together with metabolomics, which is the study of the intermediate and end-products of cellular processes. Metaproteomics is a comparatively new approach which is facing a number of empirical, technical, computationa ...[more]

PMID: 31692741

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