Proteomics

Dataset Information

0

Genome-wide identification of Dickeya solani genes regulated in response to potato (Solanum tuberosum L.) and bittersweet nightshade (Solanum dulcamara L.) tissues

ABSTRACT: The purpose of this study was to identify and characterize the D. solani genes that are differentially expressed in the early stages of infection of S. tuberosum (model for primary crop host) and S. dulcamara (model plant for alternative non-crop host) by a process of a random mutagenesis of D. solani IPO2222 genome using Tn5 transposon and a promotorless gusA reported gene. This was done as an initial step to better understand the mechanisms used by D. solani to colonize (primary and alternative) plant hosts. The aim of this study was also to associate the identified bacterial genes with phenotypes including ecological fitness and virulence in host plants. The implications of the findings are discussed.

INSTRUMENT(S): TripleTOF 5600

ORGANISM(S): Solanum Tuberosum (potato)

TISSUE(S): Plant Cell

SUBMITTER: Paulina Czaplewska  

LAB HEAD: Paulina Malgorzata Czaplewska

PROVIDER: PXD017118 | Pride | 2021-09-09

REPOSITORIES: Pride

Json Xml
altmetric image

Publications

Genome-Wide Identification of <i>Dickeya solani</i> Transcriptional Units Up-Regulated in Response to Plant Tissues From a Crop-Host <i>Solanum tuberosum</i> and a Weed-Host <i>Solanum dulcamara</i>.

Czajkowski Robert R   Fikowicz-Krosko Jakub J   Maciag Tomasz T   Rabalski Lukasz L   Czaplewska Paulina P   Jafra Sylwia S   Richert Malwina M   Krychowiak-Maśnicka Marta M   Hugouvieux-Cotte-Pattat Nicole N  

Frontiers in plant science 20200902

<i>Dickeya solani</i> is a Gram-negative bacterium able to cause disease symptoms on a variety of crop and ornamental plants worldwide. Weeds including <i>Solanum dulcamara</i> (bittersweet nightshade) growing near agricultural fields have been reported to support populations of soft rot bacteria in natural settings. However, little is known about the specific interaction of <i>D. solani</i> with such weed plants that may contribute to its success as an agricultural pathogen. The aim of this wor  ...[more]

Similar Datasets

Transcriptomics Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
2013-02-01 | GSE26206 | GEO
Transcriptomics Transcript microarray to investigate effect of Alternaria solani inoculation on Solanum tuberosum Desiree leaves
2020-10-01 | E-MTAB-8477 | biostudies-arrayexpress
Transcriptomics Expression data in whole Arabidopsis seedlings after treatment with Rhizoctonia solani AG8 and AG2-1
2013-02-01 | E-GEOD-26206 | biostudies-arrayexpress
Genomics Dickeya solani
| PRJNA173096 | ENA
Proteomics The periplasmic oxidoreductase DsbA is required for virulence of the phytopathogen Dickeya solani
2022-02-15 | PXD028047 | Pride
Genomics Dickeya solani
| PRJNA611911 | ENA
Genomics Dickeya solani
| PRJNA679711 | ENA
Genomics Dickeya solani
| PRJNA679708 | ENA
Unknown Oxygen Availability Influences Expression of Dickeya solani Genes Associated With Virulence in Potato (Solanum tuberosum L.) and Chicory (Cichorium intybus L.).
| S-EPMC5872005 | biostudies-literature
Transcriptomics Rhizoctonia solani AG8 infection of wheat seedling roots
2015-11-04 | GSE74671 | GEO