Proteomics

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Probing the biogenesis pathway and dynamics of thylakoid membranes_C4PR_LIV


ABSTRACT: Thylakoid membranes are the specialized internal membrane system produced in plants, algae, and cyanobacteria to convert sunlight to chemical energy via oxygenic photosynthesis. Cyanobacterial thylakoid membranes harbor the protein complexes and electron transport molecules that are necessary for photosynthetic light reactions and respiratory electron flow. The thylakoid membranes sit between the plasma membrane and the central cytoplasm, leading to intricate cellular compartmentalization. How thylakoid membranes are generated to form the functional network and how protein complexes are recruited into thylakoids remain elusive. Here, we developed a method to modulate thylakoid biogenesis in the model cyanobacterium Synechococcus elongatus PCC7942 and probed the spatial-temporal stepwise biogenesis process of cyanobacterial thylakoid membranes, using electron microscopy, in situ cryo-electron tomography, confocal microscopy, mass spectroscopy, and biochemical approaches. Our results revealed that the plasma membrane and regularly-arranged concentric thylakoid layers have no physical connections. The newly synthesized thylakoid membrane fragments commerce between the plasma membrane and pre-existing thylakoids, where the initial biogenesis of Photosystem II occurs. Photosystem I monomers appear in thylakoid membranes earlier than other photosystem assemblies. Redistribution of photosynthetic protein complexes during thylakoid biogenesis ensures establishment of the spatial organization of the functional thylakoid membrane network. This study provides insights into the molecular processes of the photosynthetic machinery biosynthesis and organization.

INSTRUMENT(S): Q Exactive

ORGANISM(S): Brachyspiraceae   Thermus thermophilus HB27   Naja ashei   Syntrophobacter fumaroxidans MPOB   Camelus dromedarius   Ophrys garganica   Klebsiella pneumoniae ATCC 43816   Brassica carinata   Phaeobacter sp. MED193   Cenchrus americanus   Pseudomonas aeruginosa PAO1H2O   Dictyostelia   Candidatus Profftella armatura   Klebsiella pneumoniae 342   Tetrastichus   Giardia intestinalis assemblage A   Scophthalmus maximus   Chlamydia trachomatis   Bos taurus   Salmo sp.   Shigella flexneri   Fomitopsis pinicola   Dinosauria   Bacillus subtilis subsp. subtilis   Methylocystis sp. SC2   Rickettsia conorii subsp. raoultii   Aliivibrio fischeri   Staphylococcus aureus subsp. aureus NCTC 8325   Thelohanellus kitauei   albimanus section   Azospirillum brasilense FP2   Nosema apis   Pituophis melanoleucus   Schizosaccharomyces pombe DM3650   Bacteroides fragilis 638R   Citrus maxima   Kryptolebias marmoratus   Nakazawaea wickerhamii   Haliotis discus hannai   Dioscorea oppositifolia   H1N1 subtype   Thermus thermophilus HB8   Lactiplantibacillus plantarum JDM1   Sciuridae   Thermococcus gammatolerans   Naja naja   Brucella anthropi ATCC 49188   Ecrobia maritima   Firmicutes   Neisseria meningitidis   Tuber magnatum   Faustovirus   Paracoccus denitrificans   Thermococcus gammatolerans EJ3   Marchantia polymorpha   unidentified marine bacterioplankton   Oryzias latipes   Aspergillus brasiliensis   Agaricus bisporus   Eudiplozoon nipponicum   Amblyomma sculptum   Coccinia grandis   Pseudomonas fluorescens PF5   Saturnispora dispora   Paracoccidioides brasiliensis Pb18   Alligator sinensis   Lynx lynx   Colobanthus quitensis   Lactobacillus iners   Acidithiobacillus ferrooxidans ATCC 53993   Trypanosoma rangeli SC58   Sulfurospirillum multivorans DSM 12446   Candidatus Endoriftia persephone   Aspergillus oryzae RIB40   Rathayibacter toxicus   Listeria monocytogenes serotype 4b   Cylindrospermopsis raciborskii CS-509   Olea europaea   Human herpesvirus 4 strain B95-8   Eubacterium maltosivorans   Capra hircus   Garcinia mangostana   Mycoplasma pneumoniae M129   Herpes simplex virus unknown type   Klebsiella pneumoniae   Xenopus laevis   Chlamydia trachomatis D/UW-3/CX   Secale cereale x Triticum turgidum subsp. durum   Human immunodeficiency virus   Theobroma cacao   Vibrio cholerae   Pinus pinaster   Strongyloides venezuelensis   Human herpesvirus 4 type 1   Rupicapra pyrenaica   Murine leukemia virus   Lentilactobacillus kefiri   Colwellia psychrerythraea 34H   Streptomyces venezuelae   Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S   Bartonella henselae str. Houston-1   Eryx colubrinus loveridgei   Aspergillus giganteus   Schmidtea mediterranea   Nannochloropsis oceanica strain IMET1   environmental samples   Staphylococcus aureus   Onchocerca lupi   Ovis canadensis mexicana   Lentinula edodes   Thalassiosira pseudonana   Clostridium butyricum DSM 10702   Amblyomma cajennense   Olavius algarvensis Gamma 3 endosymbiont   Phlebotomus papatasi   Acinetobacter baumannii ATCC 17978   Mengo virus   Escherichia coli   Thermococcus kodakarensis KOD1   environmental samples   Saccharum spp. complex hybrid   Solidesulfovibrio magneticus RS-1   Fraxinus mandshurica   Ictidomys tridecemlineatus   Erythrobacter sp. RAS19   Hypsiglena jani   Phytophthora pisi   Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10   Orbicella faveolata   Nanger dama mhorr   Rhizopus delemar   [Candida] glabrata CBS 138   Sinorhizobium meliloti BL225C   Rattus norvegicus   Streptococcus agalactiae FSL S3-026   Rhipicephalus sanguineus complex sp. ME-2011   Dicentrarchus labrax   Plasmodium yoelii   Lactobacillus delbrueckii   Vulpes vulpes   Aspergillus flavus partitivirus 1   Crassostrea gigas   Serendipita indica   Coffea canephora   Legionella pneumophila subsp. pneumophila str. Philadelphia 1   Vibrio fluvialis   Oryctolagus cuniculus   Catalpa fargesii   Yersinia pestis KIM D27   Candidatus Thiosymbion oneisti   Alicycliphilus denitrificans BC   Rhodotorula toruloides   Neisseria meningitidis MC58   Chinchilla lanigera   Daphnia pulex   Trichinella britovi   Mus musculus   Megoura viciae   Giardia lamblia ATCC 50803   Synechocystis sp. PCC 6803 substr. PCC-P   Halobacterium salinarum   Coxsackievirus B3   Acanthaster planci   Aspergillus aculeatus ATCC 16872   Thalassiosira cf. oceanica   Ambrosiozyma philentoma   Halorubrum lacusprofundi ATCC 49239   Spironucleus salmonicida   [Candida] glabrata   Phormidium sp. OSCR   Pseudomonas pseudoalcaligenes   Mycobacteroides abscessus ATCC 19977   Candidatus Methylomirabilis lanthanidiphila   Conus betulinus   Macaca nemestrina   Dehalobacter restrictus   Bacillus thuringiensis serovar kurstaki str. HD73   Oryza australiensis   Saimiri boliviensis boliviensis   Lecanicillium fungicola var. fungicola   Mytilus galloprovincialis   Pyrus x bretschneideri   Sanghuangporus   Tropilaelaps mercedesae   Legionella pneumophila subsp. pneumophila   Meles meles   Bacillus sp. 142311   Clostridium phage c-st   Neisseria meningitidis serogroup B   Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044   Vibrio parahaemolyticus   Equus asinus   Plasmodium knowlesi strain H   environmental samples   Pseudomonas phage EL   Myzus persicae persicae   Streptococcus pneumoniae D39   Platichthys flesus   Apis mellifera   Pogonomyrmex rugosus   Methanohalophilus   Russula atropurpurea   Chlorella sp. SAG 211-18   Morganella   Mus musculus x Rattus norvegicus   Dichomitus squalens   Moringa oleifera   Bordetella parapertussis 12822   Helicobacter pylori H13-1   Amphimedon   Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14   Bacillus amyloliquefaciens DSM 7 = ATCC 23350   Xanthomonas campestris   mixed culture metagenome   Bubalus bubalis   Bothrops alcatraz   human gut metagenome   Enterococcus faecium   Myxobolus honghuensis   Mycobacterium tuberculosis CDC1551   Sulfolobus acidocaldarius   Picea abies   Xanthomonas translucens   Coffea eugenioides   Candidatus Accumulibacter phosphatis   Dengue virus   Bothrops atrox   Bombus terrestris   Colpophyllia natans   Gorilla   Tachaea chinensis   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759   Renibacterium salmoninarum ATCC 33209   Salmonella enterica subsp. enterica serovar Typhimurium str. 5579   Lacrimispora saccharolytica   Saccharomyces cerevisiae EC1118   Plum pox virus   biofilm metagenome   Guillardia theta   Ianthella basta   Viola tricolor subsp. tricolor   Mycobacterium tuberculosis variant bovis AN5   Plasmodium vivax Sal-1   Candida albicans   Chlamydomonas reinhardtii   Lineus longissimus   Coffea arabica   Teleogryllus oceanicus   Coprothermobacter   Thalassiosira oceanica   Thermochaetoides thermophila   Oenococcus oeni   Lipomyces starkeyi   Salmonella enterica subsp. enterica serovar Typhimurium str. A130   Roseobacter denitrificans OCh 114   Rhizobium leguminosarum bv. viciae   Sulfolobus islandicus REY15A   Sturnus vulgaris   Conus zonatus   Burkholderia cenocepacia H111   Equus caballus   Sepioloidea lineolata   Linum usitatissimum   Gulo gulo   Brassica oleracea var. botrytis   Saccharum sp.   Campylobacter fetus subsp. fetus   Euprymna scolopes   Erysipelatoclostridium ramosum DSM 1402   Acinetobacter calcoaceticus/baumannii complex   Burkholderia thailandensis   Brassica oleracea   Bacillus anthracis str. Sterne   Paracentrotus lividus   Neospora caninum   Ictidomys tridecemlineatus arenicola   anaerobic digester metagenome   Lysiphlebus fabarum   Arbacia punctulata   Cassiopea xamachana   Aspergillus niger NRRL3   Thermoanaerobacter pseudethanolicus   Nostoc sp. FB71   Salmonella enterica subsp. enterica serovar Untypable str. 83332   Amblyomma americanum   Ehrlichia ruminantium str. Gardel   Tetranychus urticae   Nicotiana africana   Mus musculus musculus x Mus musculus castaneus   Cyprinodon variegatus   Acholeplasma laidlawii PG-8A   Faecalibacterium prausnitzii SL3/3   Nepenthes x hookeriana   Acipenser   Diplonema papillatum   Paenibacillus amylolyticus   Spongiibacter nanhainus   Blumeria hordei DH14   Alces alces   Shewanella oneidensis MR-1   Capsaspora owczarzaki   Escherichia phage T7   Drosophila melanogaster   Vibrio alginolyticus   Bartonella quintana JK 31   Selaginella moellendorffii   Roseburia   Nostoc sp.   Brachypodium distachyon   Mycobacterium avium subsp. paratuberculosis K-10   Trametes versicolor   Limosilactobacillus fermentum CECT 5716   Bacillus thuringiensis serovar berliner ATCC 10792   Tannerella forsythia   Coxiella-like endosymbiont of Rhipicephalus sanguineus complex   Bovine leukemia virus   Candida tropicalis MYA-3404   Toxoplasma gondii VEG   Palaemonetes sp. common grass shrimp associated circular virus   Pseudomonas aeruginosa str. E2UoS   Medicago sativa   Anopheles stephensi   Naegleria gruberi   Gossypium   Onchocerca volvulus   Chromatiales bacterium OalgGamma1   Rapana venosa   Clostridium botulinum F str. Langeland   Methanothermobacter thermautotrophicus   Aspergillus oryzae var. oryzae   Desulfovibrio sp. G11   Avena strigosa   Fusarium oxysporum Fo47   Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_50_11   Human immunodeficiency virus 1   Ecrobia   Acanthochromis polyacanthus   Tuber indicum   Shigella flexneri 2a str. 2457T   Datura stramonium   Brassica oleracea var. alboglabra   human metagenome   Minona ileanae   Mycoplasmopsis agalactiae   Bacillus weihenstephanensis   Komagataella pastoris DSMZ 70382   Shewanella baltica   Actinomycetia   Ancylostoma caninum   Epstein-barr virus strain p3hr-1   Mycobacterium tuberculosis H37Ra   Escherichia phage vB_EcoP_SU10   Dickeya dadantii subsp. dadantii   Montastraea cavernosa   Pseudo-nitzschia delicatissima   Brassica rapa var. rapa   Populus tremula x Populus alba   Quercus ilex   Philodryas patagoniensis   Leuconostoc gelidum subsp. gasicomitatum   Craterostigmus tasmanianus   Luteibacter   Nicotiana clevelandii   Ursus americanus   Equus hydruntinus   Mammut americanum   Buchnera aphidicola (Acyrthosiphon pisum)   Lingula anatina   Cancer irroratus   Lactococcus lactis subsp. cremoris UC509.9   uncultured microorganism   Mouse mammary tumor virus   Lentimonas   Lagomorpha   Caulobacter vibrioides NA1000   Polyporus umbellatus GSX09   Brucella   Clostridioides difficile R20291   Geobacillus sp. WSUCF1   Nematostella vectensis   Nitrospira marina Nb-295   Arabidopsis thaliana   Erythrobacter sp. HL-111   Acinetobacter baumannii ACICU   Plasmodium falciparum   Andrias davidianus   Dunaliella salina   Aspergillus sydowii   Daphnia   Escherichia coli BL21(DE3)   Geobacter sulfurreducens PCA   Vulpes lagopus   Nephila clavipes   Oryctolagus cuniculus algirus   Homo   Ralstonia solanacearum GMI1000   Crassostrea hongkongensis   Naja mandalayensis   Burkholderia sp. 2332   Cucumis sativus   Legionella pneumophila   Syntrophomonas wolfei   Phaeocystis antarctica   Leishmania braziliensis MHOM/BR/75/M2904   Mycolicibacterium smegmatis MC2 155   Anguilla anguilla   Myodes glareolus   Litoditis marina   sediment metagenome   Morchella importuna   Populus tremula   Nicotiana longiflora   Listeria monocytogenes EGD-e   Thermococcus eurythermalis   Heliocidaris erythrogramma   Saiga tatarica   Tetronarce californica   Streptococcus mutans UA159   Bacteroides sp. 1_1_11   Passiflora edulis   Chloromonas nivalis   Methanospirillum stamsii   Dendroaspis polylepis polylepis   Perkinsus marinus   Medicago sativa subsp. x varia   Camellia sinensis   Anaerostipes caccae L1-92   Trichoderma reesei QM6a   Oryctolagus cuniculus cuniculus   Caenorhabditis elegans   Cronobacter sakazakii   Nepenthes ampullaria   Rickettsia akari   Afrohybanthus enneaspermus   Camponotus floridanus   Manica rubida   Dichocoenia stokesii   Penicillium verrucosum   Toxoplasma gondii PRU   Granulicatella adiacens ATCC 49175   Sepiadarium austrinum   Ciona intestinalis   Botrytis cinerea B05.10   Alcaligenes faecalis   Crithidia fasciculata   Mytilus edulis/galloprovincialis MCLGV-2007   Giardia intestinalis assemblage B   Blumeria graminis f. sp. tritici   Fragaria x ananassa   Prochlorococcus marinus subsp. pastoris str. CCMP1986   Ruminiclostridium papyrosolvens DSM 2782   Bacillus thuringiensis Bt407   Riftia pachyptila   Tilletia controversa   Agrobacterium fabrum str. C58   Aspergillus flavus NRRL3357   Acyrthosiphon pisum   [Candida] auris   Streptomyces scabiei 87.22   Bacillus amyloliquefaciens   Prunus avium   Streptococcus pneumoniae TIGR4   Acanthamoeba polyphaga   Cyclopes didactylus   Synechococcus phage S-SSM7   Boehmeria nivea   Aeropyrum pernix   Myxobolus wulii   Serratia marcescens   Burkholderia sp. Bk   Klebsiella aerogenes   Actinomycetospora chiangmaiensis DSM 45062   Bacteria   Phikzvirus phiKZ   Pseudoliparis swirei   Kalanchoe fedtschenkoi   Alteromonadales   Clematis chinensis   Mycoplasma pneumoniae 19294   Paracoccidioides lutzii Pb01   Mytilus sp. CHGF4   Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819   Tyrannosaurus rex   Carboxydothermus ferrireducens DSM 11255   Norovirus   Gorilla gorilla gorilla   Cupriavidus pinatubonensis JMP134   Human coronavirus NL63   Listeria monocytogenes   Aspergillus fumigatus Af293   other sequences   Pseudomonas aeruginosa PAO1   Betainfluenzavirus   Peniophora incarnata   Pan troglodytes   Citrobacter freundii   Methanothrix   Proteus mirabilis HI4320   Bacteroides fragilis NCTC 9343   Bifidobacterium kashiwanohense PV20-2   Microcystis aeruginosa PCC 7806   Azumapecten farreri   Mycoplasma gallisepticum   Spirochaeta sp. ELBA   Schizosaccharomyces pombe   Methanosarcina acetivorans   Sinorhizobium meliloti 1021   Moorella thermoacetica ATCC 39073   Phytophthora capsici   Yersinia pestis   Francisella tularensis subsp. holarctica FSC200   freshwater sediment metagenome   Rhodopseudomonas palustris   Vicia faba   Octopus vulgaris   Ctenopharyngodon idella   Candidatus Carsonella ruddii DC   Shigella dysenteriae   Piaractus mesopotamicus   Bacteria incertae sedis   Bacillus velezensis   Francisella tularensis   Enhydra lutris nereis   Bacillus subtilis subsp. subtilis str. 168   Nicotiana alata   Ecrobia ventrosa   Acinetobacter nosocomialis   Tuber melanosporum Mel28   Musa ABB Group   Kuraishia capsulata   Bacillus mycoides DSM 2048   Helicoverpa armigera   Takifugu fasciatus   Clostridium   Klebsiella pneumoniae BIDMC 40   Vibrio anguillarum   Crotalus durissus terrificus   Phaeodactylum tricornutum CCAP 1055/1   Haemaphysalis longicornis   Parhyale hawaiensis   Capsicum annuum var. annuum   Aedes aegypti densovirus   Streptococcus agalactiae   Schistosoma mansoni   Populus yunnanensis   Histomonas meleagridis   Pyricularia oryzae   Candida dubliniensis   Leishmania mexicana MHOM/GT/2001/U1103   Acinetobacter baumannii   Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499   Bos indicus   Cairina moschata   Tapirus terrestris   Rhinocerotidae   Ipomoea batatas   Wheat dwarf virus - [Taiyuan]   Fasciola hepatica   Leishmania chagasi   Cecropia peltata   [Ruminococcus] gnavus   Pseudomonas aeruginosa LESB58   Acinetobacter baumannii 1656-2   Streptococcus equi subsp. equi   Streptococcus pyogenes   Viola odorata   synthetic construct   Mycoplasma gallisepticum S6   Candidatus Thioglobus autotrophicus   Cleome angustifolia   Pseudomonas aeruginosa UCBPP-PA14   Trichechus manatus   Saccharomyces cerevisiae W303   Bacillus cytotoxicus NVH 391-98   rhizosphere soil bacteria ensemble   Crotalus adamanteus   Pachycladon fastigiatum   Cucumber mosaic virus   Triticum aestivum   Lentibacter algarum   Dinoroseobacter shibae DFL 12 = DSM 16493   Salmonella enterica subsp. enterica serovar Typhimurium str. D23580   Chlamydomonas reinhardtii CC3269   unclassified Thermococcus   Phoenix dactylifera   Moneuplotes crassus   Synechocystis sp.   Influenza A virus (A/WSN/1933(H1N1))   Sus scrofa   Tamias striatus   Trypanosoma cruzi marinkellei   Desulfovibrio ferrophilus   Citrobacter rodentium   Bombus terrestris audax   Nitrospirillum amazonense CBAmc   Desmodesmus subspicatus   Planococcus halocryophilus Or1   Stichodactyla haddoni   Eimeria tenella   Gallus gallus   Aspergillus fumigatus   Castor   Dickeya solani   Meandrina meandrites   Human adenovirus 2   Thermosynechococcus vestitus BP-1   Sorghum bicolor   Rhodopseudomonas palustris CGA009   Paulinella chromatophora   Brassica oleracea var. capitata   Fusarium oxysporum f. sp. lycopersici 4287   Cryptococcus neoformans var. grubii H99W   Norovirus Hu/GII/JP/2015/GII.P17_GII.17/Kawasaki308   Blastocystis   Pachysolen tannophilus   Saccharomyces cerevisiae S288C   Candida dubliniensis CD36   Pseudomonas taiwanensis   Akkermansia muciniphila ATCC BAA-835   Panthera tigris   Vitis riparia   Capsicum frutescens   Halomonas sp.   Eriocheir sinensis   Nosema ceranae   Helicobacter pylori 26695   Acidiphilium cryptum JF-5   Ursus maritimus   Influenza A virus (A/California/07-00002/2009(H1N1))   Lotus japonicus   Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120200   environmental samples   Murine leukemia virus isolates   Leishmania major   Pinus taeda   Stagonospora   Pachycladon exile   Bactrocera dorsalis   Fusarium graminearum GZ3639   Avian infectious bronchitis virus (strain Beaudette CK)   Acesta excavata   Saccharum hybrid cultivar SP80-3280   Trichodesmium erythraeum IMS101   Mammuthus sp.   Mycobacteroides abscessus   Butyrivibrio proteoclasticus B316   Crocosphaera subtropica ATCC 51142   Acanthamoeba castellanii   Bemisia tabaci   Nicotiana x sanderae   Trypanosoma cruzi   Marthasterias glacialis   Staphylococcus saprophyticus   Alternaria tomato   Synechococcus phage syn9   marine metagenome   Paramoeba perurans   Tetropium castaneum   Aspergillus nidulans TN02A3   Laurasiatheria   Lactococcus lactis subsp. cremoris NZ9000   Boiga irregularis   Mycoplasma feriruminatoris   Zea mays   Mycoplasmopsis bovis HB0801   Clavibacter michiganensis subsp. michiganensis NCPPB 382   Tradescantia spathacea   Eucalyptus   Sporocytophaga myxococcoides   Pyrenochaeta sp.   Modestobacter marinus BC501   Saccharomyces cerevisiae YJM789   Meyerozyma guilliermondii ATCC 6260   Coronavirus PREDICT CoV-2   Oryctolagus sp. 'Rabbit_OD'   Tenebrio molitor   Magnetospirillum gryphiswaldense   Bodo saltans   Staphylococcus sp. 1   Lactiplantibacillus plantarum subsp. plantarum   Solanum lycopersicum   Spiroplasma melliferum   Ceratopteris richardii   marine sediment bacterium ISA-3146   Pinctada maxima   Trypanosoma cruzi Dm28c   Butyrivibrio fibrisolvens   Xylocopa violacea   Yersinia pseudotuberculosis   Heligmosomoides polygyrus bakeri   Madurella mycetomatis   soil bacterium 10G-05   Porphyromonas gingivalis   Klebsiella pneumoniae MGH 78578   Acidovorax citrulli   Medicago truncatula var. truncatula   Hippoglossus hippoglossus   fungal sp. 5OL6-6PL1   Riptortus pedestris   Camponotus fellah   Fusobacterium nucleatum subsp. nucleatum ATCC 25586   Thermus thermophilus   Influenza A virus   Mycolicibacterium smegmatis   Tarenaya hassleriana   Streptococcus dysgalactiae subsp. equisimilis SK1249   Myotis lucifugus   Cupriavidus basilensis   metagenomes   Nicotiana rustica   Leishmania guyanensis species complex   Eutrema salsugineum   Lactobacillus johnsonii N6.2   Staphylococcus cohnii   Artemisia annua   Passer domesticus domesticus   Equisetum arvense   Anas platyrhynchos   Sistrurus catenatus   Strigomonas culicis   Cricetidae   Tilletia caries   Human alphaherpesvirus 1 strain 17   Meleagris gallopavo   Mammuthus primigenius   Flavobacterium columnare   Streptococcus uberis   Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2   Polytomella parva   unclassified Bacteria   Toxoplasma gondii ME49   Mycobacterium tuberculosis C StG4006   Echis carinatus   Qipengyuania flava   Rousettus aegyptiacus   Dendrobium sp. XMW-2002-13   mouse gut metagenome   Lathyrus sativus   Streptomyces sp. MBT84   Amycolatopsis mediterranei S699   Thalassiosira pseudonana CCMP1335   Candidatus Methylomirabilis oxyfera   Arion vulgaris   Pinus nigra   Inquilinus limosus   Venturia pyrina   Willaertia magna   Momordica cochinchinensis   Sulfolobus islandicus   Delonix regia   Trypanosoma cruzi cruzi   Latrodectus hesperus   Thermoplasma acidophilum DSM 1728   Rhodothermus marinus DSM 4252   Malassezia pachydermatis   Podospora   Santalum album   Paulownia   Panine betaherpesvirus 2   Stylophora pistillata   Algoriphagus marincola HL-49   Amycolatopsis   Fungi   Leishmania major strain Friedlin   Pomacea maculata   Vairimorpha necatrix   Scylla paramamosain   Pleuromamma xiphias   Meyerozyma guilliermondii   Thermothelomyces heterothallicus   bioreactor sludge metagenome   Gammarus roeselii   Sinorhizobium meliloti   Serratia plymuthica   Eulimnogammarus cyaneus   Leymus chinensis   Microplitis mediator   Synechococcus cyanophage syn   Sinopodophyllum hexandrum   Ricinus communis   Andreprevotia sp. IGB-42   Gelatoporia subvermispora   Orthopoxvirus   Acanthamoeba polyphaga mimivirus   Plasmodium sp. pBT9   Rhizorhabdus wittichii   Mycobacterium tuberculosis SP7   Acanthoscurria gomesiana   Leishmania amazonensis   Saccharomyces cf. cerevisiae   Plasmodium berghei   Brochothrix thermosphacta   Triatoma dimidiata   Hendra virus horse/Australia/Hendra/1994   Calvadosia cruxmelitensis   Triatoma sordida   Cryptococcus neoformans var. grubii H99   Chlorocebus aethiops aethiops   Quercus suber   Malus domestica   Malaclemys terrapin   Brachionus plicatilis   Tannerella forsythia 92A2   methanotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen)   Brucella abortus   Agaricus bisporus var. bisporus   Nepenthes ventricosa x Nepenthes alata   Pseudomonas composti   Mucidula mucida   Pisolithus tinctorius Marx 270   Laxus oneistus   Orycteropus afer   Olavius algarvensis spirochete endosymbiont   Hebomoia glaucippe   Pseudomonas chlororaphis   Olavius algarvensis   Taenia hydatigena   Brassica oleracea var. gemmifera   Clostridium autoethanogenum   Neosciurus carolinensis   Aspergillus fumigatus CEA10   Influenza A virus (A/Viet Nam/1203/2004(H5N1))   Plutella xylostella   Lithobius forficatus   Chitinophaga pinensis   Pseudomonas stutzeri   Human herpesvirus 5 strain Merlin   Bordetella bronchiseptica   Glossina morsitans   Daphnia magna   Corynebacterium diphtheriae NCTC 13129   Burkholderia cenocepacia K56-2Valvano   Bordetella pertussis Tohama I   Nannospalax galili   Tetrahymena thermophila SB210   Methanospirillum hungatei JF-1   Panax ginseng   Escherichia coli Nissle 1917   Skeletonema dohrnii   Glycine max x Glycine soja   Giardia intestinalis   Coprothermobacter proteolyticus   Chlamydia trachomatis L2/434/Bu(i)   wastewater metagenome   Macadamia   Gnathostoma spinigerum   Cryptosporidium andersoni   Hyalella azteca   Anopheles gambiae   Lacticaseibacillus casei str. Zhang   Sus scrofa domesticus   Streptomyces coelicolor   Strix varia   Triticum monococcum subsp. monococcum   Human adenovirus 5   Pseudovibrio sp. FO-BEG1   Asterias rubens   Cavia porcellus   Klebsiella variicola At-22   Anoplocephala perfoliata   Streptomyces lincolnensis   Phytophthora capsici LT1534   Acanthamoeba castellanii mimivirus   Mammalia   Tubastraea coccinea   Streptomyces sp. MC1   Chlamydia trachomatis 434/Bu   Rupicapra rupicapra   Streptococcus suis SC84   Sphingobium chlorophenolicum   Dorea longicatena DSM 13814   Tetratrichomonas gallinarum   Pogostemon cablin   Burkholderia dolosa AU0158   Oryza sativa Japonica Group   Triticum turgidum subsp. durum   Toxoplasma gondii GT1   Sparus aurata   Equus asinus africanus   Brassica napus   Nitrososphaera viennensis EN76   Heterosigma akashiwo   Paracatenula sp. 'standrea' Elba   Ambystoma mexicanum   Bartonella henselae   Cyanophora paradoxa   Faecalibacterium prausnitzii   Myotis ricketti   Aspergillus   Plasmodium falciparum 365.1   Siphoviridae   Nicotiana maritima   Streptomyces avidinii   Formosa sp. Hel1_33_131   Naja mossambica   Escherichia coli O157:H7   Chlorobaculum tepidum   Sphingobium sp. AM   Helianthus annuus   Mesembryanthemum crystallinum   Nothobranchius furzeri   Aggregatibacter actinomycetemcomitans   Malassezia furfur   Mycobacterium avium subsp. paratuberculosis   Valsa mali   Streptomyces lividans TK24   Brucella abortus str. 2308 A   Cupriavidus necator N-1   Trypanosoma brucei brucei TREU927   Enterococcus faecium DO   Lolium perenne subsp. perenne   Bordetella bronchiseptica RB50   Synechocystis sp. PCC 6803 substr. Kazusa   Knufia petricola   Bacteroides caccae   Tremella   Neptuniibacter caesariensis   Vitis labrusca x Vitis riparia   Ixodes ricinus   Teseptimavirus T7   Arachis hypogaea   Staphylococcus aureus subsp. aureus USA300_TCH1516   Rhizobium leguminosarum bv. phaseoli CCGM1   Naja oxiana   Viola   Sinorhizobium americanum   Lagenaria siceraria   Microbacterium oxydans   Modiolus kurilensis   Toxoplasma gondii RH   uncultured bacterium   Haloferax volcanii DS2   Felis catus   Citrus wilsonii   unclassified Candidatus Omnitrophica   Hymenolepis microstoma   Bacillus thuringiensis   Clostridium botulinum A str. Hall   Acipenser baerii x Acipenser schrenckii   Plasmodium falciparum FcB1/Columbia   Conus caracteristicus   Bifidobacterium pseudolongum   Entamoeba histolytica HM-1:IMSS-B   Nannochloropsis gaditana CCMP526   Arvicola   Myrmica rubra   Taraxacum sp.   Populus cathayana   Pichia kudriavzevii   Bemisia cf. tabaci Middle East-Asia Minor 1   Centruroides vittatus   Enterobacter cloacae   Influenza B virus (B/Memphis/13/2003)   Eucalyptus spp. mixed library   Bacillus licheniformis   Hordeum vulgare   Leishmania tarentolae   Babjeviella inositovora   Granulicella sp.   Ustilaginoidea virens   Streptomyces sp. MBT42   Influenza A virus (A/New Caledonia/20-JY2/1999(H1N1))   Bungarus   Streptococcus equi subsp. equi 4047   Dryopteris affinis subsp. affinis   Paracoccus denitrificans PD1222   Ixodes scapularis   Toxoplasma gondii   Trichomonas vaginalis   Capra ibex   Geobacillus kaustophilus HTA426   Pseudomonas sp. Lz4W   Mentha spicata   Tomato spotted wilt orthotospovirus   Python bivittatus   Serendipita vermifera 'subsp. bescii'   Candidatus Margulisbacteria   Nevskia ramosa   Campylobacter jejuni   Axis axis   Leptospira interrogans   Acinetobacter baumannii AB307-0294   Helicobacter pylori 26695-1   Dendrobium huoshanense   Human herpesvirus 5 strain AD169   unclassified Bacillarnavirus   Sphingobium indicum B90A   Lactococcus lactis subsp. lactis Il1403   Streptococcus mutans 19   Gadus morhua   Bothrops neuwiedi   Cucurbita maxima   Human papillomavirus type 16   Tetrahymena thermophila   gut metagenome   Pseudomonas ogarae   Musa AAB Group   Fibrobacter succinogenes subsp. succinogenes S85   Vespula vulgaris   Cancer   Synechocystis sp. PCC 6803 substr. GT-S   Oryza longistaminata   Dioscorea alata   Trypanosoma vivax Y486   Doryteuthis pealeii   Endozoicomonas   Argulus foliaceus   Corynebacterium glutamicum   Betacoronavirus sp.   Deinococcus radiodurans R1   Calicophoron daubneyi   Desmodus rotundus   Euphorbia characias   Mycoplasma pneumoniae M129-B7   Norwalk virus   Ebolavirus   Acinetobacter baylyi ADP1   Azospirillum baldaniorum   Leishmania donovani BPK282A1   Apteronotus leptorhynchus   Lactococcus lactis   Salmonella enterica subsp. enterica serovar Newport   Eulimnogammarus vittatus   Microbiota   Cloning vector pEGFP-C1   Pyricularia oryzae P131   Penaeus vannamei   Mustela sp.   Cyclotella cryptica   Mesocricetus auratus   Helianthus tuberosus   Clostridioides difficile str. A-027   Plasmodium falciparum UGK 730.2   Mylodon darwinii   mixed sample   Homo sapiens/Mus musculus xenograft   Mycobacterium tuberculosis variant bovis str. Ravenel   Dictyostelium discoideum AX4   Fusarium graminearum   Lactuca sativa   Aspergillus carbonarius ITEM 5010   Mustela putorius furo   Cupiennius salei   rat gut metagenome   Leishmania mexicana   Strigamia maritima   Myxobilatus gasterostei   Ursus arctos   Prorocentrum donghaiense   Bacillus cereus F837/76   Fraxinus nigra   Millerozyma acaciae   Megaloceros giganteus   Chara australis   Neoporphyra haitanensis   Human coronavirus HKU1   Naja pallida   Octopodiformes   Dimocarpus longan   Leishmania donovani Ld 2001   Clostridium butyricum E4 str. BoNT E BL5262   Ustilago maydis virus P4   Catenibacterium   Cereibacter sphaeroides 2.4.1   Severe acute respiratory syndrome coronavirus 2   Candida parapsilosis   Lolium arundinaceum   Stenotrophomonas rhizophila   Rhodospirillum rubrum ATCC 11170   Pyrococcus abyssi   Volvariella volvacea V23   Strawberry leafy fruit phytoplasma   Streptococcus pyogenes ABC020006030   Muvirus mu   Hydrolagus colliei   Listeria monocytogenes serotype 4b str. F2365   Armoracia rusticana   Serendipita vermifera MAFF 305830   Schistosoma haematobium   Tritrichomonas foetus   Halobacterium   Pomacea canaliculata   Rhizobium sp. Leaf68   Candidatus Brocadia sapporoensis   Colinus virginianus   Staphylococcus aureus subsp. aureus USA300_FPR3757   Peterozyma xylosa   Macaca mulatta   Myzus persicae   Yersinia pestis CO92   Spiroplasma melliferum KC3   Xenopsylla cheopis   Porphyromonas gingivalis ATCC 33277   Paenibacillus polymyxa ATCC 842   Escherichia coli O157:H7 str. TW14359   Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon   Panicum virgatum   Chenopodium quinoa   Trichomonas vaginalis G3   Vibrio cholerae O1 str. VC91   Synechocystis sp. PCC 6803 substr. GT-I   Spizellomyces punctatus   Spheniscus demersus   Vaccinia virus   Syntrophus aciditrophicus   Capreolus capreolus   Corynebacterium glutamicum ATCC 13032   Serpentes sp. WLS21042014   Carica papaya   Candida albicans SC5314   Litoricola marina   Bacillus toyonensis BCT-7112   Saccharomycopsis capsularis   Acheta domesticus   Sarcophilus harrisii   Physcomitrella   Human alphaherpesvirus 1 strain KOS   Triaenophorus crassus   Plasmodium berghei ANKA   Shigella sonnei 53G   Stenotrophomonas maltophilia   Chryseobacterium indologenes   Haemophilus influenzae Rd KW20   Salmonella enterica subsp. enterica serovar Typhimurium str. LT2   Colobus guereza   Buddenbrockia plumatellae   Fusarium oxysporum f. sp. conglutinans Fo5176   marine plankton environmental sample   Rickettsia massiliae MTU5   Staphylococcus aureus subsp. aureus NN50   Juglans regia   Parasteatoda tepidariorum   Diploria labyrinthiformis   Arachis hypogaea var. vulgaris   Desulforapulum autotrophicum HRM2   Nostoc punctiforme PCC 73102   Allexis   Mycobacterium avium 100   Plasmodium falciparum 3D7   Vigna mungo   Aerococcus urinae NBRC 15544 = CCUG 36881   Euterpe oleracea   Rhynchocyon petersi   Macaca fascicularis   Cellulomonas gilvus ATCC 13127   Ophiophagus hannah   Equidae   Ruegeria pomeroyi   Dictyostelium discoideum   Viola tricolor   Methanoculleus sp. 10   Schizosaccharomyces pombe 927   Japanese encephalitis virus   Chroococcidiopsis thermalis PCC 7203   Thalassiosira oceanica CCMP1005   Manihot esculenta   Anisakis simplex complex   Fabomonas tropica   Salmonella enterica subsp. enterica serovar Enteritidis   Prevotella bryantii B14   Corynebacterium ulcerans bv. belfanti   Oreochromis mossambicus   Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu   Paramecium tetraurelia   Aedes aegypti   Fusarium oxysporum f. sp. lycopersici   Methanobacterium   Ectocarpus siliculosus   Clostridium perfringens   Xanthomonas oryzae pv. oryzae PXO99A   Gossypium hirsutum   Noccaea caerulescens   Leptopilina   Brugia malayi   Linnemannia elongata AG-77   Anisakis simplex   Bothrops leucurus   Picea likiangensis var. rubescens   Escherichia coli str. K-12 substr. W3110   Photobacterium profundum SS9   Venturia inaequalis   Paenibacillus polymyxa   Naja sagittifera   Avicennia officinalis   Didelphis aurita   Lactiplantibacillus plantarum WCFS1   Citrullus lanatus   Eggerthella phage P3   Neurospora crassa   Nicotiana forgetiana   Mollivirus sibericum   Ovis aries musimon   Lobaria pulmonaria   'Phaseolus vulgaris' phytoplasma   Beauveria bassiana ARSEF 2860   Bothrops jararacussu   Ovis aries   Aeropyrum pernix K1   Verticillium longisporum   Sedum plumbizincicola   Aspergillus niger   Polypodium hydriforme   Liberibacter endosymbiont of Diaphorina citri   Allochromatium vinosum DSM 180   Nicotiana langsdorffii   Ficus carica   Methylorubrum extorquens DM4   Entamoeba histolytica   Chlorocebus aethiops   Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088   Propionibacterium freudenreichii   Toxoplasma gondii CtCo5   Pseudodiploria strigosa   Priestia megaterium DSM 319   Medicago truncatula   Acinetobacter sp. SA01   Aspergillus niger ATCC 13496   Legionella pneumophila str. Paris   Liquorilactobacillus hordei   Plasmodium falciparum D10   Pteropus alecto   Mycobacterium tuberculosis   Helicobacter hepaticus   Crunoecia irrorata   Cicer arietinum   Gyrodactylus kobayashii   Eremothecium gossypii   Homo sapiens subsp. 'Denisova'   Callinectes sapidus   West Nile virus   Leptospermum scoparium   Pachycladon enysii   Breviatea   Acinetobacter baumannii AB_TG2631   Coxiella burnetii   Oryza sativa Indica Group   Pseudomonas sp. UK4   Gorilla gorilla   Gossypium robinsonii   Acipenser transmontanus   Puccinellia tenuiflora   Saccharopolyspora erythraea   Bison   Mycobacterium tuberculosis KZN 1435   Loxodonta africana   Architeuthis dux   Aspergillus niger CBS 513.88   Aggregatibacter actinomycetemcomitans D7S-1   Tremarctos ornatus   Thermothelomyces thermophilus ATCC 42464   Cupriavidus metallidurans   Caballeronia mineralivorans   Panopea generosa   Mus   Pseudomonas aeruginosa PAK   Myrmica ruginodis   Bothrops insularis   Pongo abelii   Micrurus fulvius   Ferrimicrobium acidiphilum DSM 19497   Chlamydia trachomatis L2/434/Bu(f)   Lolium multiflorum   Struthio camelus   Persicaria minor   Delftia acidovorans SPH-1   Laodelphax striatellus   Vitis vinifera   Leishmania sp. MHOM/IN/80/DD8   Corucia zebrata   Afipia carboxidovorans   Amblyrhynchus cristatus   Vitis hybrid cultivar   Rosa chinensis   Scolopendra morsitans   Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130   Vibrio harveyi   Acanthoscurria rondoniae   Schistocephalus solidus   Listeria phage A118   Salmo salar   uncultured Phormidium sp.   Morganella   Pseudomonas syringae pv. syringae   Streptococcus pyogenes M1 GAS   Emiliania   Staphylococcus aureus subsp. aureus COL   Staphylococcus haemolyticus   Phormidium rubidum A09DM   Spondylus gaederopus   Nicotiana gossei   Ictalurid herpesvirus 1   Prevotella intermedia ATCC 25611 = DSM 20706   Streptomyces coelicolor A3(2)   Nicotiana plumbaginifolia   Wolbachia sp. wMelPop   Methanobrevibacter cuticularis   unclassified Marseilleviridae   Microbacterium sp.   Oncorhynchus mykiss   Channa striata   Nicotiana glauca   Chlorocebus sabaeus   Klebsiella pneumoniae LCT-KP289   Cytophaga hutchinsonii   Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821   Saccharina japonica   Metarhizium robertsii   Vicia faba var. faba   Capsicum annuum   Sphingomonas sp. Leaf257   Quercus robur   Rhizoctonia solani AG-8 WAC10335   Helicoverpa armigera armigera   SARS bat coronavirus   Cricetulus barabensis   Viruses   Brassica oleracea var. italica   Bifidobacterium longum subsp. longum   Anser cygnoides   Wolbachia endosymbiont of Culex quinquefasciatus Pel   artificial sequences   Cuniculiplasma divulgatum   Sorangium cellulosum So ce56   Flavivirus   Plasmodium falciparum 58.1   Spongospora subterranea   Ascaris suum   Papaver somniferum   Lentinus crinitus   Kluyveromyces marxianus   Beauveria bassiana   Carnobacterium maltaromaticum   Herbaspirillum seropedicae   Trypanosoma brucei   Dehalococcoides mccartyi BTF08   Fusarium graminearum PH-1   Staphylococcus xylosus   Emiliania huxleyi   Magnaporthe sp. MG05   Clostridium saccharoperbutylacetonicum   Schistosoma japonicum   Klebsiella pneumoniae ATCC BAA-2146   Gynandropsis gynandra   Leuconostoc gelidum subsp. gelidum   Hevea brasiliensis   Spirometra erinaceieuropaei   Pseudomonas fluorescens SBW25   Mycobacterium tuberculosis CAS   Aspergillus tubingensis   Phytophthora infestans T30-4   Toxoplasma gondii GAB3-2007-GAL-DOM9   Equus sp.   Lachancea waltii NCYC 2644   Cricetulus griseus   Manduca sexta   Opisthorchis viverrini   Rhizophagus irregularis   Musa   Taiwanofungus camphoratus   Listeria monocytogenes HCC23   Stephanorhinus   Ornithodoros moubata   Solanum tuberosum   Methylorubrum extorquens PA1   Aedes aegypti aegypti   Python molurus   Enterococcus mundtii CRL35   Radix auricularia   Dactylorhiza   Antidorcas marsupialis   Simulium damnosum s.l. Me1   Mycobacterium tuberculosis K   Influenza A virus (A/Aichi/68/2007(H3N2))   Candidatus Glomeribacter   uncultured Desulfobacterium sp.   Nicotiana sylvestris   Trypanosoma brucei brucei   Clostridioides difficile ATCC 43255   Anopheles culicifacies A   Hadronyche infensa   Xanthomonas campestris pv. campestris str. B100   Quercus petraea   Dionaea muscipula   Obba rivulosa   Nepenthes rafflesiana   Trypanosoma dionisii   Erysipelothrix rhusiopathiae   Halomonas sp. TD01   Castor canadensis   Loxosceles intermedia   Cyprinus carpio   Solanum lycopersicum x Solanum tuberosum   Arabidopsis   Mycoplasma hyopneumoniae 232   Aspergillus terreus NIH2624   Osphranter rufus   Bradyrhizobium japonicum   Amphora coffeiformis   Tepidimicrobium xylanilyticum   Lilium   Sinorhizobium americanum CCGM7   Norovirus Hu/GII.4/Saga4/2009/JP   Mycobacterium marinum   Escherichia coli HT115   Synechococcus elongatus   Trypanosoma erneyi   Apostichopus japonicus   Oenothera elata   Paenibacillus sp.   Cynodon dactylon   Influenza A virus (H1N1)   Nesocodon mauritianus   Alligator mississippiensis   Tuber aestivum   Phytophthora infestans   Prochlorococcus marinus str. MIT 9313   Roseburia inulinivorans DSM 16841   Bartonella quintana   Cervus elaphus   uncultured soil microorganism   Austrolebias   Lingulodinium polyedra   Pseudomonas aeruginosa PA14   Deinococcus radiodurans   Pyrococcus furiosus   Cyanobacterium stanieri   Natronomonas pharaonis DSM 2160   Malassezia globosa   Diaphorina citri   Agkistrodon piscivorus   Nelumbo nucifera   Francisella orientalis FNO12   Orthomyxoviridae   Pasteurella multocida subsp. multocida str. Pm70   Methermicoccus shengliensis DSM 18856   Citrus sinensis   Aiptasia   Dreissena polymorpha   Micrurus tener   Stegodyphus mimosarum   Paenibacillus pabuli   Hypsizygus marmoreus   Methanosarcina mazei Go1   Acinetobacter sp. PM-14   Pedobacter sp.   Corynebacterium diphtheriae bv. mitis str. ISS 3319   Archaea   Rahnella aquatilis   Mycobacterium tuberculosis str. Beijing/W BT1   Beta vulgaris   Clostridioides difficile 050-P50-2011   Candidatus Kuenenia stuttgartiensis   Mycoplasma pneumoniae M29   Streptomyces roseifaciens   Rickettsia conorii str. Malish 7   Trichomonas gallinae   Rheum palmatum   Spodoptera frugiperda   Mrakia psychrophila   Brucella abortus 104M   Leishmania tropica   Peromyscus leucopus   Rangifer tarandus   Burkholderia cenocepacia   Oscillatoriaceae cyanobacterium   Telmatactis   Mus musculus wagneri   Balneola vulgaris   Pseudomonas sp. 'Pseudom. M1'   Vibrio cholerae O1 biovar El Tor str. N16961   Streptococcus pneumoniae   Campylobacter jejuni subsp. jejuni 81116   Candidatus Riegeria   Fusarium fujikuroi IMI 58289   Thermoclostridium stercorarium   Paraconiothyrium   Pseudodiploria clivosa   Geobacillus kaustophilus   Opsanus beta   Influenza A virus (A/California/07/2009(H1N1))   Exidia glandulosa HHB12029   Pogona vitticeps   Schizophyllum commune H4-8   Ustilago maydis   Lonicera japonica   Veillonella parvula DSM 2008   Aves   Prochlorococcus marinus str. MIT 9312   Piper nigrum   Pyricularia oryzae B157   Musa acuminata subsp. acuminata   Bothrops cotiara   Rhizobium leguminosarum bv. viciae 3841   Staphylococcus aureus subsp. aureus USA300   Cedrela fissilis   Heterocephalus glaber   Pachycladon cheesemanii   Pseudoalteromonas flavipulchra NCIMB 2033 = ATCC BAA-314   Desulforamulus reducens MI-1   Acetomicrobium mobile   Desulfoluna spongiiphila   Naja annulifera   Rhizobium cf. leguminosarum   Chlorella vulgaris   Anopheles culicifacies B   Bothrops jararaca   Galleria mellonella   Coprococcus comes ATCC 27758   Listeria phage A500   Nitrososphaera viennensis   Ictalurus punctatus   Lactococcus phage   Mycoplasma suis KI3806   Tuber albidum   Neospora caninum Liverpool   Sycon ciliatum   Coprococcus eutactus   Drosophila mauritiana   Vaccinia virus WR   [Candida] boidinii   Cervus nippon nippon   Influenza A virus (A/Wilson-Smith/1933(H1N1))   Listeria monocytogenes serotype 1/2a   Eucalyptus globulus   Culex pipiens pipiens   Pseudomonas fluorescens   Oryza barthii   Helicobacter pylori J99   Brevibacterium casei   Deinococcus deserti VCD115   Fusarium sp.   Aspergillus wentii   Castor fiber   Pseudomonas syringae   Macaca fascicularis fascicularis   Leishmania donovani   Synechococcus sp. BL107   Scheffersomyces stipitis   Toxoplasma gondii type III   Bradyrhizobium diazoefficiens   Prevotella ruminicola 23   Notamacropus eugenii   Cyanistes caeruleus   Carya cathayensis   Agkistrodon contortrix   Bithynia siamensis goniomphalos   Nicotiana benavidesii   Hermarchus sp. HER2   Angiostrongylus vasorum   Clostridium cellulovorans   Drosophila pseudoobscura   Mycobacterium tuberculosis H37Rv   Canis lupus x Canis lupus familiaris   uncultured Clostridium sp.   Botrytis cinerea T4   Tetrahymena thermophila CU428   Borreliella burgdorferi B31   Tomato yellow leaf curl virus   Candidatus Accumulibacter   Burkholderia pseudomallei 1026b   Haemonchus contortus   Chlorella sp. FC2 IITG   Nicotiana benthamiana   Lactobacillus sp. Y10   Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841   Leptospira borgpetersenii serovar Hardjo   Heloderma suspectum suspectum   Bacillus cereus ATCC 14579   Mayaro virus (strain Brazil)   Galloanserae   Pinus radiata   Human herpesvirus 8 strain rKSHV.219   Physalis angulata   Emiliania huxleyi virus 207   Oomycota   Sulfolobus islandicus LAL14/1   Coxiella burnetii RSA 493   Human alphaherpesvirus 1   Staphylococcus pseudintermedius   Roseobacter sp. MED193   Soa   Bacillus altitudinis   Lachancea kluyveri   Microcystis aeruginosa NIES-843   Phytophthora sojae   Chaetoceros sp.   Secale cereale   Porphyromonas gingivalis W83   Herpesvirales   Synechococcus elongatus PCC 7942 = FACHB-805   Steinernema carpocapsae   Francisella tularensis subsp. novicida U112   Anaerotignum neopropionicum DSM 3847   Aquilaria sinensis   Ascoidea rubescens   Penicillium sp. B12   Moraxella catarrhalis   Citrus hybrid cultivar   Acetobacterium wieringae   Daboia russelii   Bradyrhizobium   Melopsittacus undulatus   Nicotiana glutinosa   Tursiops truncatus   Drosophila   Kluyveromyces lactis NRRL Y-1140   Saccharum officinarum   Papio hamadryas   Streptococcus thermophilus LMD-9   Rhizobium favelukesii   Formosa sp. Hel3_A1_48   Pseudomonas pseudoalcaligenes CECT 5344   Streptococcus pyogenes STAB901   Saccharum hybrid cultivar x Sorghum bicolor   Biomphalaria glabrata   Tortispora caseinolytica   Bathymodiolus azoricus   Vertebrata   Broussonetia papyrifera   Brassica rapa   Pseudomonas putida KT2440   Sesamum indicum   Breviolum minutum   Rattus rattus   Cryptococcus neoformans var. grubii VNI   Capra pyrenaica   Epichloe festucae E2368   Escherichia coli O157:H7 str. EDL933   Caprinae   Amaranthus tricolor   Bos grunniens   hybrid   Bacillus pseudomycoides DSM 12442   Staphylococcus lugdunensis   Orbicella annularis   Anneissia japonica   Ensifer adhaerens   Trypanosoma cruzi strain CL Brener   Lutra lutra   Ovis   Candida albicans 24C   Nicotiana paniculata   Oreochromis niloticus niloticus   Plasmodium falciparum Dd2   environmental samples   Cytomegalovirus   Photinus pyralis   Norovirus Hu/GII.4/MI001/2011/USA   Olavius algarvensis Gamma 1 endosymbiont   Lymnaea stagnalis   Microcystis aeruginosa   Dehalococcoides mccartyi CG1   Neisseria meningitidis FAM18   Pteropus rodricensis   Rhizobium leguminosarum bv. viciae Vc2   Gasterosteus aculeatus   Haloferax volcanii   Dolichospermum circinale AWQC310F   Citeromyces matritensis   Alteromonas macleodii ATCC 27126   Bothrops moojeni   Dolichospermum circinale AWQC131C   Mycobacterium tuberculosis SP13   Corallochytrium limacisporum   Homo sapiens   Lasiodiplodia theobromae   Malassezia sympodialis ATCC 42132   HIV-1 M:B_HXB2R   Dokdonia sp. MED134   Naegleria fowleri   soil metagenome   Bothrops brazili   Polaribacter marinivivus   Glia   Corylus avellana   Syntrophus aciditrophicus SB   Scutigera coleoptrata   Diplazium maximum   Gefionella okellyi   Campylobacter concisus 13826   Burkholderia cenocepacia J2315   Francisella tularensis subsp. tularensis   Frankia alni   [Ruminococcus] gnavus ATCC 29149   Conus geographus   Campylobacter fetus subsp. fetus 82-40   Ursus arctos arctos   Cyberlindnera jadinii   Taeniopygia guttata   Tribolium castaneum   Aspergillus nidulans FGSC A4   Klebsiella pneumoniae subsp. pneumoniae DSM 30104 = JCM 1662 = NBRC 14940   Trypanosoma cruzi strain Esmeraldo   Synechococcus sp. PCC 7002   Bursaphelenchus xylophilus   Periplaneta americana   Solenopsis invicta   Oleidesulfovibrio alaskensis G20   Verticillium dahliae JR2   Lasius niger   Trichoderma sp. 1 YW-2011   Clostridioides difficile   prokaryotic environmental samples   Latilactobacillus curvatus   Serpentes   Komagataeibacter europaeus   Bicyclus anynana   Ganoderma lingzhi   Metopolophium dirhodum   Anaerococcus hydrogenalis DSM 7454   Xanthomonas campestris pv. vesicatoria str. 85-10   Vitis   Sepia officinalis   Melioribacter roseus P3M-2   Olavius algarvensis Delta 4 endosymbiont   Botryococcus braunii   Stylosanthes guianensis   Nicotiana bonariensis   Olavius algarvensis Delta 1 endosymbiont   Thermochaetoides thermophila DSM 1495   Flavobacterium sp. 316   Cryptochiton stelleri   Thecamonas trahens   Echinococcus ortleppi   Palaemon carinicauda   Petunia   Human herpesvirus 2 strain 186   Anacardium occidentale   Hepatitis E virus type 1   Human betaherpesvirus 5   Fagus grandifolia   Mahonia   Crustacea   Acinetobacter sp.   Prototheca zopfii   Xanthomonas retroflexus   Liquorilactobacillus nagelii   Corallium rubrum   Tetraponera aethiops   Zalophus californianus   Bacillus cereus   microbial mat metagenome   Bacillus pumilus   Fusarium oxysporum f. sp. cucumerinum   phytoplankton environmental sample   Aedes albopictus   Tequatrovirus T4   Pristhesancus sp. 00004635   Mycoplasma pneumoniae   Salmonella enterica subsp. enterica serovar Enteritidis str. P125109   Gammarus fossarum   Hippopotamus amphibius   Zymoseptoria tritici IPO323   Cladocopium goreaui   Streptomyces sp.   Staphylococcus aureus subsp. aureus str. Newman   Halomonas sp. HL-48   Streptococcus pneumoniae R6   Panagrolaimus   Klebsiella variicola   Staphylococcus epidermidis   Labeo rohita   Mycobacterium marinum ATCC BAA-535   Wolbachia pipientis wMelCS   Alphainfluenzavirus   Saccharomyces cerevisiae   Limosilactobacillus mucosae LM1   Clostridia   Blattella germanica   Frankliniella sp. BIOUG14947-G11   Roseburia intestinalis L1-82   Nitrospinae   Mycobacterium tuberculosis TKK-01-0032   Leishmania infantum   Physcomitrium patens   Ruminiclostridium cellulolyticum H10   Lactobacillus   Entamoeba histolytica HM-1:IMSS-A   Hydra vulgaris   Ferroplasma   Lichtheimia corymbifera JMRC:FSU:9682   Methanothermococcus thermolithotrophicus DSM 2095   Cylindrospermopsis raciborskii CS-506   Piscirickettsia salmonis AUSTRAL-005   Phascolarctos cinereus   Roseburia hominis A2-183   Cellulophaga baltica NN016038   Pseudomonas putida F1   Bivalvia   Canis lupus familiaris   Serratia phage JS26   Podospora anserina S mat+   Escherichia coli str. K-12 substr. MG1655   Bacillus subtilis   Bacillus cereus ATCC 10987   Ralstonia pickettii   Carnobacterium divergens   Desulfofundulus kuznetsovii DSM 6115   Lingulodinium   Oncorhynchus tshawytscha   Aplysia californica   Mycobacterium tuberculosis SP22   Haemophilus influenzae   Wolbachia endosymbiont of Diaphorina citri   Amphistegina lobifera   Danio rerio   Chelodina longicollis   Helicobacter pylori A45   Candida tropicalis   Vitis riparia x Vitis rupestris   Brenneria nigrifluens   Brucella melitensis   Komagataella pastoris   Neisseria gonorrhoeae FA 1090   Tepidanaerobacter acetatoxydans   Glycine soja   Mycobacterium tuberculosis variant bovis BCG str. Moreau RDJ   Anastrepha ludens   Deinococcus radiodurans ATCC 13939   cf. Chlorella sp.   Dentex dentex   Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456   Francisella tularensis subsp. holarctica   Potentilla saundersiana   Mycobacterium tuberculosis variant bovis BCG   Rickettsia rickettsii   Brucella abortus 2308   Entamoeba histolytica HM-1:IMSS   Penicillium oxalicum   Euglena gracilis   Komagataella phaffii   Sophora alopecuroides   Beauveria bassiana CGMCC 7.34   Cowpox virus (Brighton Red)   Passer hispaniolensis   Bombyx mori   Nicotiana repanda   Candidatus Protochlamydia amoebophila UWE25   Bacillariophyta   Penicilliopsis zonata   Pseudomonas putida   Mastigamoeba balamuthi ATTC 30984   Gigantopelta aegis   Naja nigricincta nigricincta   Cuon alpinus   Gammarus pulex   Phaeodactylum tricornutum   Dugesia japonica   Pseudomonas jessenii   Echinococcus granulosus   Dehalococcoides mccartyi   Pongo pygmaeus   Solanum peruvianum   Parasynechococcus marenigrum WH 8102   Neisseria gonorrhoeae   Bifidobacterium longum NCC2705   Paulownia fortunei   Podospora anserina   Campylobacter concisus UNSWCD   Clostridium cellulovorans 743B   Eubacterium limosum   Merluccius bilinearis   Onchocerca ochengi   Frankia coriariae   Bacillus mycoides NBRC 101238 = DSM 11821   Prochlorococcus marinus subsp. marinus str. CCMP1375   Populus tremula x Populus tremuloides   Roseibaca calidilacus   Selenomonas sputigena ATCC 35185   Corynebacterium diphtheriae   Pandanus amaryllifolius   Acidipropionibacterium acidipropionici   Micrococcus luteus   Amphibalanus amphitrite   Phycicoccus elongatus Lp2   Phaseolus vulgaris   Rosaceae   Cutibacterium acnes SK137   Colon   Serratia inhibens PRI-2C   Nerodia clarkii   Bordetella parapertussis   Beta vulgaris subsp. vulgaris   Pachysolen tannophilus NRRL Y-2460   Trypanosoma   Saccharomyces cerevisiae BY4741   Marseillevirus   Larimichthys crocea   Hippophae rhamnoides   Aeromonas sp. enrichment culture clone AM2   Oryza sativa   Streptococcus thermophilus   Bordetella pertussis   Aspergillus terreus   Clavispora lusitaniae ATCC 42720   Shigella sonnei   Saccharum hybrid cultivar   Drosophila simulans   Dehalococcoides mccartyi CBDB1   Saccharomyces mikatae IFO 1815   Synechococcus sp. WH 7803   Synechococcus sp. YX04-3   Escherichia coli K-12   Mycobacterium tuberculosis M24   Leucoraja erinacea   Musa acuminata AAA Group   Gardnerella vaginalis   Cervus nippon hortulorum   Coelodonta antiquitatis   uncultured marine microorganism   Ceuthophilus sp. Ceu_104_TX_San_Rattlesnake   Rhizobium sp. CIAT652   Daktulosphaira vitifoliae   Saccharolobus solfataricus   Tropheryma whipplei TW08/27   Rickettsia slovaca 13-B   Sulfurihydrogenibium   Populus trichocarpa   Lactobacillus crispatus   Heterorhabditis megidis   Streptococcus pneumoniae SP14-BS69   Blautia producta ATCC 27340 = DSM 2950   Synechocystis sp. PCC 6803   Amblyomma   Plasmodium vivax   Pseudomonas aeruginosa   Peromyscus eremicus   Listeria monocytogenes EGD   Rhodobacter capsulatus SB 1003   Nostoc flagelliforme   Lacticaseibacillus rhamnosus   Nelumbo nucifera subsp. nucifera   Salmonella enterica subsp. enterica serovar Typhimurium   Petunia x hybrida   Francisella tularensis subsp. holarctica LVS   Pichia fermentans   Lactococcus lactis subsp. cremoris MG1363   Tilletia indica   Staphylococcus lugdunensis N920143   Frankia alni ACN14a   Nostoc sp. PCC 7120 = FACHB-418   Enterococcus faecalis   Scorpaena plumieri   Filifactor alocis   Salmonella enterica subsp. enterica serovar Typhimurium str. SDT1291   Crocuta   Escherichia coli O157:NM   Candidatus Midichloriaceae   Enchytraeus crypticus   Globicatella sanguinis   Mycobacterium tuberculosis LAM7   Giardia sp.   Nicotiana noctiflora   Mycoplasma hominis ATCC 23114   Trichoderma reesei RUT C-30   Acidithiobacillus ferrooxidans   Elaeis guineensis   Haemophilus haemolyticus   Trichinella pseudospiralis   Sordaria macrospora k-hell   Nicotiana tabacum   Staphylococcus aureus subsp. aureus MRSA252   Pseudomonas aeruginosa LESlike1   Acanthoscurria geniculata   Acinetobacter baumannii CI79   Sitobion avenae   Klebsiella pneumoniae JH1   Streptomyces sp. EF-93   soil bacterium TS1114R   Sistrurus miliarius barbouri   Thymallus thymallus   Leishmania braziliensis   Actinoplanes sp. SE50/110   Tospovirus kiwifruit/YXW/2014   Levilactobacillus brevis   Acaryochloris marina MBIC11017   Sterolibacterium denitrificans   Aspergillus aff. niger A2   Cannabis   Viridiplantae   unidentified chimeric sequence   Pectobacterium carotovorum   Apis mellifera pomonella   Spinacia oleracea   Candidatus Paraburkholderia kirkii   Helicobacter pylori E48   Streptococcus mutans serotype C   Sorghum bicolor x Saccharum hybrid cultivar   Pseudotsuga menziesii   Nilaparvata lugens   Yersinia enterocolitica   Cryptosporidium parvum   Limnobacter thiooxidans   environmental samples   Stappia stellulata DSM 5886   Taenia solium   Chaetodon lunulatus   Neomegalonema perideroedes   Oenothera glazioviana   Dialister   Exiguobacterium sp. SH31   Aspergillus nidulans   Marchantia polymorpha subsp. ruderalis   (Vitis vinifera x Vitis berlandieri) x Vitis berlandieri   Pseudomonas putida BIRD-1   Vipera berus berus   HIV-1 vector pNL4-3   Zygaena filipendulae   Geobacter sulfurreducens   glacier metagenome   Ciona robusta   Glycine max   environmental samples   sludge granule bacterium 1   Nitrospira moscoviensis   Candidatus Nitrospira inopinata   Malus baccata   Klebsiella oxytoca   Cowpox virus   Staphylococcus sp. KDM4   Cervus elaphus elaphus   Acromyrmex echinatior   HBV genotype D   Thermodesulfobium acidiphilum   Vibrio vulnificus VV   Hepatitis C virus genotype 1   Ogataea polymorpha   Escherichia coli O26:H11   Burkholderia ubonensis MSMB22   Sulfobacillus thermosulfidooxidans   Agrostis stolonifera   Emiliania huxleyi CCMP371   Clostridioides difficile 630   Jatropha curcas   Halobacterium salinarum R1   Aepyceros melampus   Myxococcus xanthus DZ2   Treponema   Picrorhiza kurrooa   Gallus   Conus striatus   Haptophyta   Ophrys x arachnitiformis subsp. archipelagi   Hominidae   Viola inconspicua   Bienertia sinuspersici   Pythium sp. PV So7   Euzebya tangerina   Streptomyces griseorubens   Tupavirus   Pachycladon novaezelandiae   Paradendryphiella salina   Cajanus cajan   Salmonella enterica subsp. enterica serovar Muenchen   Cryptococcus neoformans var. grubii H99S   Caretta caretta x Chelonia mydas   Eukaryota   Camelidae   Crocuta crocuta   Burkholderia pseudomallei K96243   Blastococcus saxobsidens   Planctopirus limnophila DSM 3776   Lacticaseibacillus rhamnosus GG   Bacteroides thetaiotaomicron VPI-5482   Apis mellifera ligustica   Toxoplasma   Clavibacter michiganensis subsp. nebraskensis NCPPB 2581   Human immunodeficiency virus type 1 3916-CRO   Yarrowia lipolytica   Sulfuritalea   Legionella   Trifolium pratense subsp. pratense   Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150   Dirofilaria immitis   Aspergillus fumigatus var. fumigatus   HIV-1 M:G_PT919   Avena sativa   Coprococcus sp. ART55/1   Lens culinaris   Staphylococcus aureus subsp. aureus   Geodermatophilus obscurus DSM 43160   Anopheles gambiae str. PEST   Crotalus horridus   Aspergillus versicolor   Caldanaerobacter subterraneus subsp. tengcongensis MB4   Candidatus Pelagibacter ubique   Yersinia ruckeri   Panthera leo   Trifolium pratense   Stigmatella aurantiaca DW4/3-1   Rhodococcus jostii RHA1   Ornithodoros erraticus   Elymus sibiricus   Zymomonas mobilis   Odontotaenius disjunctus   Actinidia chinensis var. chinensis   Trichoplax sp. H2   Xanthomonas citri pv. glycines str. 8ra   Caryophyllales   Aeromonas salmonicida subsp. salmonicida   Murine hepatitis virus strain A59   Rhipicephalus microplus   Olavius algarvensis sulfate-reducing endosymbiont   Mycobacterium tuberculosis H37RvAE   Hepatitis B virus   Populus tomentosa   Agrobacterium tumefaciens   Saccostrea glomerata   Sordaria macrospora   Martes martes   Ursus deningeri   Salmonella enterica subsp. enterica serovar Typhi str. CT18   Plasmodium yoelii yoelii 17XNL   Mytilus edulis   Novosphingobium nitrogenifigens   Salmonella enterica subsp. enterica serovar Cerro   Bigelowiella natans   Quercus   Fusarium cf. oxysporum   Geobacillus stearothermophilus   Bacillus cereus AH187   Pisum sativum   Pseudoalteromonas sp. D41   Acinetobacter baumannii D1279779   Acanthamoeba castellanii str. Neff   Elizabethkingia anophelis   Nymphicus hollandicus   Sarcoptes scabiei   Schizosaccharomyces pombe OY26   Cercopithecidae   Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489   Mycobacterium tuberculosis H37Rv_2009   Brucella abortus S19   Trichodesmium   Jaltomata herrerae   Mycobacterium tuberculosis variant bovis   Zoanthus sp.   Leptospirillum   Pygoscelis adeliae   Mesoplasma florum L1   Salmonella bongori   Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344   thiotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen)   Pseudomonas sp.   Mariprofundus ferrooxydans   Angiostrongylus cantonensis   Streptococcus pyogenes MGAS5005   Strongylocentrotus purpuratus   Acinetobacter baumannii AB5075   Pseudotsuga menziesii var. menziesii   Nicotiana quadrivalvis   Foeniculum vulgare   Durusdinium trenchii   Mycobacterium tuberculosis SP10   Dasypogon diadema   Brachylophosaurus canadensis   Cellulophaga baltica 18   Rhodnius prolixus   Acetivibrio thermocellus   Plasmodium yoelii yoelii   Klebsiella pneumoniae UHKPC27   Amphiporus lactifloreus   Paucilactobacillus suebicus   Myxococcus xanthus DK 1622   Cellvibrio japonicus Ueda107   unidentified   Arcobacter   Haberlea rhodopensis   Trichoderma harzianum CBS 226.95   Clostridium tetani E88   Corynebacterium glutamicum K051   Tilletia laevis   Hyphomicrobium sp. MC8b   Ostreococcus tauri   Varroa destructor   Streptococcus suis   Bothrops asper   Dendroaspis angusticeps   Botrytis cinerea   Ailuropoda melanoleuca   Schizosaccharomyces pombe 972h-   Pseudomonas entomophila L48   Lactobacillus johnsonii   Trichoderma reesei QM9414   Harmonia axyridis   Nephotettix cincticeps   Cyanidioschyzon merolae   Synechococcus sp.   Aspergillus flavus   Ophrys sphegodes   Mycobacterium tuberculosis SP1   Candida parapsilosis CDC317   Craterostigma plantagineum   Pongo sp.   Aspergillus flavus FRR 342   Eimeria acervulina   Mucilaginibacter   Malassezia sympodialis   Leishmania infantum JPCM5   Bradyrhizobium diazoefficiens USDA 110  

TISSUE(S): Bacterial Protein

DISEASE(S): Disease Free

SUBMITTER: Deborah Simpson  

LAB HEAD: Professor Lu-Ning Liu

PROVIDER: PXD019731 | Pride | 2020-11-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
DS_050219_GL_1.mgf Mgf
DS_050219_GL_1.mzid.gz Mzid
DS_050219_GL_1.raw Raw
DS_050219_GL_2.mgf Mgf
DS_050219_GL_2.mzid.gz Mzid
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