Proteomics

Dataset Information

0

Absolute quantification and copy number estimation of the TNF-RSC members in A549 cells


ABSTRACT: Determine the copy number per cell of the TNF-RSC members in A549 cells using targeted proteomics (PRM) combined with spike-in of known amounts of reference peptides.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Federico Uliana  

LAB HEAD: Ruedi Aebersold

PROVIDER: PXD019959 | Pride | 2022-10-13

REPOSITORIES: Pride

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Publications

Novel biochemical, structural, and systems insights into inflammatory signaling revealed by contextual interaction proteomics.

Ciuffa Rodolfo R   Uliana Federico F   Uliana Federico F   Mannion Jonathan J   Mehnert Martin M   Tenev Tencho T   Marulli Cathy C   Satanowski Ari A   Keller Lena Maria Leone LML   Rodilla Ramírez Pilar Natalia PN   Ori Alessandro A   Gstaiger Matthias M   Meier Pascal P   Aebersold Ruedi R  

Proceedings of the National Academy of Sciences of the United States of America 20220930 40


Protein-protein interactions (PPIs) represent the main mode of the proteome organization in the cell. In the last decade, several large-scale representations of PPI networks have captured generic aspects of the functional organization of network components but mostly lack the context of cellular states. However, the generation of context-dependent PPI networks is essential for structural and systems-level modeling of biological processes-a goal that remains an unsolved challenge. Here we describ  ...[more]

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