Dataset Information
MTD project_title Fast detection of SARS-CoV-2 peptides by tandem mass spectrometry in clinical samples: a proof-of-concept study.
Ontology highlight
ABSTRACT:
INSTRUMENT(S):
ORGANISM(S): Severe Acute Respiratory Syndrome Coronavirus 2
DISEASE(S): Severe Acute Respiratory Syndrome
SUBMITTER: 
VALDEMIR CARVALHO
LAB HEAD: Valdemir Melechco Carvalho
PROVIDER: PXD021328 | Pride | 2020-10-29
REPOSITORIES: Pride
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| LIB_SARS_CoV_2.blib | Other | |||
| checksum.txt | Txt | |||
| combined_pool-18and4more.mzid.gz | Mzid | |||
| combined_pool-18and4more.mzid_combined__pool-18_and_4_more.MGF | Mzid | |||
| mqpar.xml | Xml |
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Publications
Establishing a mass spectrometry-based system for rapid detection of SARS-CoV-2 in large clinical sample cohorts.
Nature communications 20201203 1
The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is pressing public health systems around the world, and large population testing is a key step to control this pandemic disease. Here, we develop a high-throughput targeted proteomics assay to detect SARS-CoV-2 nucleoprotein peptides directly from nasopharyngeal and oropharyngeal swabs. A modified magnetic particle-based proteomics approach implemented on a robotic liquid handler enables fully automated preparation of 9 ...[more]
