Name: Rice aleurone cytosolic CFMS analysis
Keywords: Rice aleurone cytosolic cfms analysis

Dataset Information

Rice aleurone cytosolic CFMS analysis

ABSTRACT: Rice aleurone cytosolic proteome was fractionized by SEC and analyzed by LC-MSMS.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Oryza Sativa (rice)

TISSUE(S): Plant Cell, Aleurone Layer

SUBMITTER: Youngwoo Lee

LAB HEAD: Daniel B. Szymanski

PROVIDER: PXD021450 | Pride | 2021-06-17

REPOSITORIES: Pride

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Publications

Multimerization variants as potential drivers of neofunctionalization.

Lee Youngwoo Y Szymanski Daniel B DB

Science advances 20210326 13

Whole-genome duplications are common during evolution, creating genetic redundancy that can enable cellular innovations. Novel protein-protein interactions provide a route to diversified gene functions, but, at present, there is limited proteome-scale knowledge on the extent to which variability in protein complex formation drives neofunctionalization. Here, we used protein correlation profiling to test for variability in apparent mass among thousands of orthologous proteins isolated from divers ...[more]

PMID: 33771868

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Project description:Treatment of hematological malignancies by adoptive transfer of activated natural killer (NK) cells is limited by poor post-infusion persistence. We compared the ability of interleukin-2 (IL-2) and IL-15 to sustain human NK cell functions following cytokine withdrawal to model post-infusion performance. In contrasts to IL-2, IL-15 mediated stronger signaling through the IL-2/15 receptor complex and provided functional advantages. Genome-wide analysis of cytosolic and polysome-associated mRNA revealed cytokine dependent differential mRNA levels and translation during cytokine activation but also that most gene expression differences were primed by IL-15 and only manifested after cytokine withdrawal. IL-15 augmented mTOR signaling, which correlated with increased expression of genes related to cell metabolism and respiration. Consistently, mTOR inhibition abrogated IL-15-induced functional advantages. Moreover, mTOR-independent STAT-5 signaling contributed to improved NK cell function during cytokine activation but not following cytokine withdrawal. The superior performance of IL-15 stimulated NK cells was also observed using a clinically applicable protocol for NK cell expansion. Finally, expression of IL-15 correlated with cytolytic immune functions in patients with B cell lymphoma and favorable clinical outcome. These findings highlight the importance of mTOR regulated metabolic processes for immune cell functions and argue for implementation of IL-15 in adoptive NK cell cancer therapy. Freshly isolated NK cells from 6 donors were activated with IL-2 or IL-15 for 48 hours, followed by cytokine withdrawal for 24 hours, resulting in four RNA samples per donor. From each sample, both the cytosolic as well as the polysomal fraction were collected. Donor 3 contains activation and post withdrawal data from two different donors due to poor RNA-quality obtained for some samples which did not allow for processing of the complete set of 6 donors (resulting in a total of 40 samples).

Dataset Information

Rice aleurone cytosolic CFMS analysis

Publications

Multimerization variants as potential drivers of neofunctionalization.

Similar Datasets

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