Proteomics

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Proteomic profiling of Labeo Rohita; a widely cultivated fish

ABSTRACT: The aim of this study was to develop a Peptide Atlas repository for Labeo rohita. Using LC-MS/MS, we have performed in-depth proteomics analysis of 19 different sample types, including 17 tissue samples, plasma from female fish and embryo 4-day post fertilization. Whole analysis resulted in the identification of more than 6015 confident canonical proteins along with ~3000 non canonical peoteins corresponding to more than 150 thousands peptides. This proteomic dataset would complement the recently published genome to accelerate further research.

INSTRUMENT(S): Orbitrap Fusion

ORGANISM(S): Labeo Rohita (indian Major Carp)

TISSUE(S): Testis, Heart, Spleen, Brain, Embryo, Gill, Skeletal Muscle, Blood Plasma, Liver, Gall Bladder, Gut, Scale, Fin, Gas Bladder, Kidney, Eye, Ovary, Spinal Cord, Skin

SUBMITTER: Mehar Un Nissa  

LAB HEAD: Sanjeeva Srivastava

PROVIDER: PXD026377 | Pride | 2022-01-10

REPOSITORIES: Pride

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Publications

Organ-Based Proteome and Post-Translational Modification Profiling of a Widely Cultivated Tropical Water Fish, <i>Labeo rohita</i>.

Nissa Mehar Un MU   Pinto Nevil N   Mukherjee Arijit A   Reddy Panga Jaipal PJ   Ghosh Biplab B   Sun Zhi Z   Ghantasala Saicharan S   Chetanya Chetanya C   Shenoy Sanjyot Vinayak SV   Moritz Robert L RL   Goswami Mukunda M   Srivastava Sanjeeva S  

Journal of proteome research 20211228 2

Proteomics has enormous applications in human and animal research. However, proteomic studies in fisheries science are quite scanty particularly for economically important species. Few proteomic studies have been carried out in model fish species, but comprehensive proteomics of aquaculture species are still scarce. This study aimed to perform a comprehensive organ-based protein profiling of important tissue samples for one of the most important aquaculture species,<i>Labeo rohita</i>.Deep prote  ...[more]

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