Dataset Information

Shotgun proteomic analysis of the secretomes from white-rot fungus Coriolopsis gallica in presence or absence of levofloxacin.

ABSTRACT: Proteomic and proteogenomics analyses of secretomes from the white-rot fungus Coriolopsis gallica in presence or absence of levofloxacin in order to identify the proteins involved in the degradataion of the fluoroquinolone.

INSTRUMENT(S): Q Exactive HF

ORGANISM(S): Coriolopsis Gallica

SUBMITTER: Jean ARMENGAUD

LAB HEAD: Jean Armengaud

PROVIDER: PXD035019 | Pride | 2022-10-13

REPOSITORIES: pride

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Publications

Biotransformation of the Fluoroquinolone, Levofloxacin, by the White-Rot Fungus <i>Coriolopsis gallica</i>.

Ben Ayed Amal A Akrout Imen I Albert Quentin Q Greff Stéphane S Simmler Charlotte C Armengaud Jean J Kielbasa Mélodie M Turbé-Doan Annick A Chaduli Delphine D Navarro David D Bertrand Emmanuel E Faulds Craig B CB Chamkha Mohamed M Maalej Amina A Zouari-Mechichi Héla H Sciara Giuliano G Mechichi Tahar T Record Eric E

Journal of fungi (Basel, Switzerland) 20220915 9

The wastewater from hospitals, pharmaceutical industries and more generally human and animal dejections leads to environmental releases of antibiotics that cause severe problems for all living organisms. The aim of this study was to investigate the capacity of three fungal strains to biotransform the fluoroquinolone levofloxacin. The degradation processes were analyzed in solid and liquid media. Among the three fungal strains tested, <i>Coriolopsis gallica</i> strain CLBE55 (BRFM 3473) showed th ...[more]

PMID: 36135690

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Project description:Wood-degrading brown rot fungi are essential recyclers of plant biomass in forest ecosystems. Their efficient cellulolytic systems, which have potential biotechnological applications, apparently depend on a combination of two mechanisms: lignocellulose oxidation by reactive oxygen species (ROS) and polysaccharide hydrolysis by a limited set of glycoside hydrolases (GHs). Given that ROS are strongly oxidizing and non-selective, these two steps are likely segregated. A common hypothesis has been that brown rot fungi use a concentration gradient of chelated metal ions to confine ROS generation inside wood cell walls before enzymes can infiltrate. We examined an alternative: that lignocellulose-oxidation (LOX) components involved in ROS production are differentially expressed by brown rot fungi ahead of GH components. We used spatial mapping to resolve a temporal sequence in Postia placenta, sectioning thin wood wafers colonized directionally. Among sections, we measured gene expression by whole transcriptome sequencing (RNAseq) and assayed relevant enzyme activities. We found a marked pattern of LOX upregulation in a narrow (5-mm; 48-hr) zone at the hyphal front, which included many genes likely involved in ROS generation. Upregulation of GH5 endoglucanases and many other GHs clearly occurred later, behind the hyphal front, with notable exceptions of two likely expansins and a GH28 pectinase. Our results support a staggered mechanism for brown rot that is controlled by differential expression rather than microenvironmental gradients. This mechanism likely results in an oxidative pretreatment of lignocellulose, possibly facilitated by expansin- and pectinase-assisted cell wall swelling, before cellulases and hemicellulases are deployed for polysaccharide depolymerization. We sequenced mRNA from 9 Postia placenta samples taken from 3 wood sections of wafer design, with 3 bioreplicates for each wood section, to compare the gene expression during brown rot processes. Three wood sections of the wafer are representing early to late decay stages.

Dataset Information

Shotgun proteomic analysis of the secretomes from white-rot fungus Coriolopsis gallica in presence or absence of levofloxacin.

Publications

Biotransformation of the Fluoroquinolone, Levofloxacin, by the White-Rot Fungus <i>Coriolopsis gallica</i>.

Similar Datasets

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