Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparative proteomic analysis of near isogenic lines for qDSI.4B.1 QTL on short arm of chromosome 4B conferring drought tolerance in wheat

ABSTRACT: This study conducted isobaric tags for relative and absolute quantitation (iTRAQ) proteomic analysis on near-isogenic lines (NILs) to shed light on the drought tolerance conferring qDSI.4B.1 QTL on short arm of chromosome 4B.

INSTRUMENT(S):

ORGANISM(S): Triticum Aestivum (wheat)

TISSUE(S): Plant Cell, Leaf

SUBMITTER: Sina Nouraei

LAB HEAD: Sina Nouraei

PROVIDER: PXD036534 | Pride | 2023-05-24

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	220317_4944-45_iQ1.group	Other
	220317_4944-45_iQ1_Fn1.mgf	Mgf
	220317_4944-45_iQ1_Fn1.raw	Raw
	220317_4944-45_iQ1_Fn10.mgf	Mgf
	220317_4944-45_iQ1_Fn10.raw	Raw

Items per page:

1 - 5 of 75

Similar Datasets

Cobetia sp. 4B strain:4B

Project description:Cobetia sp. 4B strain:4B Genome sequencing

| PRJNA648281 | ENA

Pseudomonas sp. 4B strain:4B

Project description:Pseudomonas sp. 4B strain:4B Genome sequencing and assembly

| PRJNA511953 | ENA

Haloplasmatales bacterium 4B strain:4B

Project description:Haloplasmatales bacterium 4B strain:4B Genome sequencing and assembly

| PRJNA382612 | ENA

Sensitivity of MiaPaCa2 cells to E2F inhibitor Ly101-4B.

Project description:MiaPaCa2 cells where screened with a set of original compounds with anticancer activity available at our laboratory. From these compounds we identified the nucleoside analogue ly101-4B as a strong inhibitor of the E2F activity. We confirmed its activity by studying its effect on MiaPaCa2's cell viability , caspase 3/7 activity and LDH release, to measure cell growth, apoptosis and necrosis after treatment with LY101-4B 25 µM. Then, to investigate the mechanism of action of ly101-4B we performed a transcriptomic analysis by using an Affymetrix approach (Genechip® Human Gene 1.0 ST Arrays).

2019-02-28 | GSE109853 | GEO

Dlx3b/4b-dependent genes in early zebrafish inner ear development

Project description:Identification of genes regulated by the distal-less homeodomain transcription factors Dlx3b and Dlx4b (Dlx3b/4b). To this aim, we performed gene expression profiling analysis using data obtained from RNA-seq of 3 samples each from wt control as well as dlx3b/4b knockdown.

2023-05-19 | GSE220564 | GEO

Azospirillum lipoferum 4B strain:4B

Project description:Azospirillum lipoferum 4B genome sequencing project.

| PRJEA50367 | ENA

Transcriptome analysis of Azospirillum lipoferum 4B during its interaction with rice roots

Project description:Investigation of whole genome gene expression level changes in a Azospirillum lipoferum 4B associated to artificial roots, Oryza sativa japonica cv. Cigalon roots and Oryza sativa japonica cv. Nipponbare roots, compared to the strain grown in liquid culture. For each of the four condition, two replicates were analysed on an A. lipoferum 4B whole genome expression array designed by Roche Nimblegen, Inc. (Madison, WI, USA), based on the genome sequence (Wisniewski-DyM-CM-) et al. 2011), as follows: two replicates of 5 probes (length, 60 nucleotides) per gene, covering 6,242 genes and using a total of 62,178 probes.

2014-01-01 | E-GEOD-42450 | biostudies-arrayexpress

The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

Project description:To assess the effects of histone deacetylase (HDAC) inhibitor, HDACi 4b, treatment on muscle function on a molecular level, we performed microarray analysis on skeletal muscle (gastrocnemius) samples from wt and N17182Q mice treated with the HDAC inhibitor 4b for 3 months (50 mg/kg; s.c. injection 3x weekly; n=4 per group). The transcriptome pattern in N17182Q mice compared to wt controls consisted of deficits in the expression of genes related to mitochondrial function and oxidative metabolism. In addition, we noted that numerous genes associated with basal contractile function were altered in HD N17182Q mice. These include genes related to the muscle contractile complex, Tnnt3 and Myh8, as well as several additional myosin genes: myosin heavy chain genes, Myh10 and Myh4, and myosin light chain genes, Myl1, Mylc2 and Mylk. These findings implicate deficits in the underlying contractile function in skeletal muscle from HD mice. Further, we found robust effects of 4b treatment on the expression of genes in skeletal muscle, with 556 genes showing significantly altered expression, at p<0.005, in 4b-treated N17182Q muscle compared to vehicle-treated control mice.

2014-11-01 | GSE56963 | GEO

The effect of HDAC inhibitor, 4b, on skeletal muscle gene expression

2014-11-01 | E-GEOD-56963 | biostudies-arrayexpress

Mycobacterium avium subsp. paratuberculosis 4B strain:4B

Project description:Mycobacterium avium subsp. paratuberculosis 4B Genome Sequencing

| PRJNA72215 | ENA