Proteomics

Dataset Information

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Phosphoproteomic profiling highlights CDC42 and CDK2 as key players in the regulation of the TGF-β pathway in ALMS1 and BBS1.


ABSTRACT: Using genomic editing with CRISPR-CAS9 and phosphoproteomics we have studied the TGF-β signalling pathway in knock-out (KO) models for ALMS1 and BBS1 genes. We have developed a network diffusion-based analysis pipeline to expand the data initially obtained and to be able to determine which processes were deregulated in the TGF-β pathway. Finally, we have analysed protein-protein interactions to prioritise candidate genes in the regulation of the TGF-β pathway in Alström and Bardet Biedl syndrome.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture, Fibroblast

DISEASE(S): Ciliopathy

SUBMITTER: Brais Bea Mascato  

LAB HEAD: Brais Bea-Mascato

PROVIDER: PXD037573 | Pride | 2025-11-17

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
2022LT001_BRBE_001_02_10ug.raw Raw
2022LT001_BRBE_001_abundances_Proteins.xlsx Xlsx
2022LT001_BRBE_002_02_10ug.raw Raw
2022LT001_BRBE_002_abundances_Proteins.xlsx Xlsx
checksum.txt Txt
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Publications

Phosphoproteomic profiling highlights CDC42 and CDK2 as key players in the regulation of the TGF-β pathway in ALMS1 and BBS1 knockout models.

Bea-Mascato Brais B   Giudice Girolamo G   Pinheiro-de-Sousa Iguaracy I   Solarat Carlos C   Barbeito Pablo P   Petsalaki Evangelia E   Valverde Diana D  

Scientific reports 20251105 1


The primary cilium is a sensory organelle that extends from the plasma membrane. It plays a vital role in physiological and developmental processes by controlling different signalling pathways such as WNT, Sonic hedgehog (SHh), and transforming growth factor β (TGF-β). Ciliary dysfunction has been related to different pathologies such as Alström (ALMS) or Bardet-Biedl (BBS) syndrome. The leading cause of death in adults with these syndromes is chronic kidney disease (CKD), which is characterised  ...[more]

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