Dataset Information

Large collection of HeLa LFQ quality control and maintenance runs

ABSTRACT: Collection of HeLa maintenance and quality control runs for several years. The dataset was acquired to be used for exploration of deep learning models, initially in the scope of imputation. The repository for this archiv contains hints on how to use the three curated datasets and the single runs as filtered data. It provides links to the files on PRIDE.https://github.com/RasmussenLab/hela_qc_mnt_data The current pre-print of the data descriptor can be found here:https://doi.org/10.21203/rs.3.rs-3083547/v2

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Epithelial Cell, Cell Culture

DISEASE(S): Adenocarcinoma

SUBMITTER: Henry Webel

LAB HEAD: Simon Rasmussen

PROVIDER: PXD042233 | Pride | 2023-12-12

REPOSITORIES: Pride

ACCESS DATA

Dataset's files

Source:

			Action	DRS
	2013_04_03_16_54_Q-Exactive-Orbitrap_1.raw	Raw
	2013_04_03_16_54_Q-Exactive-Orbitrap_1.zip	Other
	2013_04_03_17_47_Q-Exactive-Orbitrap_1.raw	Raw
	2013_04_03_17_47_Q-Exactive-Orbitrap_1.zip	Other
	2013_04_03_19_47_Q-Exactive-Orbitrap_1.raw	Raw

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Publications

Mass spectrometry-based proteomics data from thousands of HeLa control samples.

Webel Henry H Perez-Riverol Yasset Y Nielsen Annelaura Bach AB Rasmussen Simon S

Scientific data 20240123 1

Here we provide a curated, large scale, label free mass spectrometry-based proteomics data set derived from HeLa cell lines for general purpose machine learning and analysis. Data access and filtering is a tedious task, which takes up considerable amounts of time for researchers. Therefore we provide machine based metadata for easy selection and overview along the 7,444 raw files and MaxQuant search output. For convenience, we provide three filtered and aggregated development datasets on the pro ...[more]

PMID: 38263211

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