Proteomics

Dataset Information

Reanalysis of Data-dependent acquisition based proteomic datasets of Mycobacterium abscessus

ABSTRACT: Detection of species-specific proteotypic peptides for accurate and easy characterization of infectious non-tuberculous mycobacteria such as Mycobacterium abscessus is essential. Therefore, we carried out reanalysis of publicly available M. abscessus proteomic dataset MSV000085363, PXD015680 and PXD022644 by proteome database search and followed by spectral library generation. The raw DDA data were searched against the M. abscessus proteome database using Proteome Discoverer and FragPipe. The resulting peptide spectrum matches were converted into a spectral library using BiblioSpec.

INSTRUMENT(S):

ORGANISM(S): Mycobacterium Abscessus (strain Atcc 19977 / Dsm 44196 / Cip 104536 / Jcm 13569 / Nctc 13031 / Tmc 1543)

SUBMITTER: Keshava Prasad T. S.  

LAB HEAD: Dr T. S. Keshava Prasad

PROVIDER: PXD045930 | Pride | 2024-03-07

REPOSITORIES: Pride

Json Xml

Dataset's files

Source:
Action DRS
MSV000085363_FragPipe_Search.zip Other
MSV000085363_FragPipe_Search_Output.zip Other
MSV000085363_FragPipe_Search_SpecLib.blib Other
MSV000085363_M_abscessus_SPS3_TMT_Proteomics_111822.blib Other
MSV000085363_M_abscessus_SPS3_TMT_Proteomics_111822.pdResult Other
Items per page:
1 - 5 of 22
altmetric image

Publications

Sorry, this publication's infomation has not been loaded in the Indexer, please go directly to PUBMED or Altmetric.

Publication: 1/4

Similar Datasets