Proteomics

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Targeting cholesterol homeostasis eliminates drug-tolerant persister cells in glioblastoma


ABSTRACT: The transition of cancer cells between drug-sensitive and drug-tolerant persister phenotypes drives treatment failures. Using glioblastoma models, we identified MRK-740, an inhibitor of H3K4 methyltransferase PRDM7/9, as a potent enhancer of chemotherapy-induced cell death, resulting in elimination of glioblastoma persister cells. Mechanistic investigations as well as analysis of glioblastoma specimens revealed that H3K4me3 is a transcription-activating mark at the promoters of key genes involved in cholesterol biosynthesis. The inhibition of H3K4 methylation in cells treated with microtubule-targeting agents led to the disruption of cholesterol homeostasis and LXR-dependent cholesterol efflux, ultimately depleting intracellular cholesterol and causing the death of persisters. Furthermore, we have developed a brain permeable microtubule-targeting agent to validate these mechanistic findings in vivo. We show that a combination of our novel chemotherapeutic agent and a brain permeable LXR agonist significantly extends survival in a glioblastoma mouse model. These results uncover the importance of balanced cholesterol homeostasis in chemotherapy tolerance.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Brain

DISEASE(S): Brain Cancer

SUBMITTER: Jason Low  

LAB HEAD: Lenka Munoz

PROVIDER: PXD050643 | Pride | 2025-12-22

REPOSITORIES: Pride

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Publications

Histone methyltransferase PRDM9 promotes survival of drug-tolerant persister cells in glioblastoma.

Joun George L GL   Kempe Emma G EG   Chen Brianna B   Sterling Jayden R JR   Abbassi Ramzi H RH   Friess Dana D   Singleton Matthew M   Choudhury Chandra C   Marian Oana C OC   du Preez W Daniel WD   Recasens Ariadna A   Clark Teleri T   Du Tian Y TY   Low Jason K K JKK   Kim Hani H   Yang Pengyi P   Khor Jasmine J   Hoque Monira M   Indurthi Dinesh C DC   Kuchibhotla Mani M   Palanisamy Ranjith R   Jorgensen William T WT   Montgomery Andrew P AP   Baker Jennifer R JR   Higginbottom Sarah L SL   Tomaskovic-Crook Eva E   Crook Jeremy M JM   Loo Lipin L   Day Bryan W BW   Neely G Gregory GG   Guccione Ernesto E   Johns Terrance G TG   Kassiou Michael M   Feng Yuchen Y   Harris Lachlan L   Don Anthony S AS   Munoz Lenka L  

Nature communications 20251215 1


Chemotherapy often kills a large fraction of cancer cells but leaves behind a small population of drug-tolerant persister cells. These persister cells survive drug treatments through reversible, non-genetic mechanisms and cause tumour recurrence upon cessation of therapy. Here, we report a drug tolerance mechanism regulated by the germ-cell-specific H3K4 methyltransferase PRDM9. Through histone proteomic, transcriptomic, lipidomic, and ChIP-sequencing studies combined with CRISPR knockout and ph  ...[more]

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