Proteomics

Dataset Information

0

USP7, a protein involved in Hao-Fountain syndrome, controls neuronal differentiation via BCOR-ncPRC1.1


ABSTRACT: Pathogenic variants in the ubiquitin-specific protease 7 (USP7) gene cause a neurodevelopmental disorder called Hao-Fountain syndrome. However, which of its pleiotropic substrates are relevant for neurodevelopment is undetermined. Here, we present a combination of quantitative proteomics, transcriptomics and epigenomics to define the USP7 regulatory circuitry during neurodifferentiation. USP7 activity is required for the transcriptional programs that direct differentiation of embryonic stem cells to neural stem cells, and neuronal differentiation of SHSY5Y neuroblastoma cells. USP7 controls the dosage of the Polycomb H2AK119ub1 ubiquitin ligases ncPRC1.1 and ncPRC1.6. Loss-of-function experiments revealed that BCOR-ncPRC1.1, but not ncPRC1.6, is a key effector of USP7-dependent neuronal differentiation. Indeed, BCOR-ncPRC1.1 mediates the majority of USP7-dependent gene regulation during this process. Besides providing a detailed map of the USP7 regulome during neurodifferentiation, our results suggest that USP7- and ncPRC1.1-associated neurodevelopmental disorders involve dysregulation of a common epigenetic network.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

SUBMITTER: Jeroen Demmers  

LAB HEAD: Jeroen demmers

PROVIDER: PXD051616 | Pride | 2025-09-08

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
DIA_Diff_Med_USP7het_1.raw Raw
DIA_Diff_Med_USP7het_2.raw Raw
DIA_Diff_Med_USP7het_3.raw Raw
DIA_Diff_Med_WT_1.raw Raw
DIA_Diff_Med_WT_2.raw Raw
Items per page:
1 - 5 of 136
altmetric image

Publications


Pathogenic variants in the ubiquitin-specific protease 7 (<i>USP7</i>) gene cause a neurodevelopmental disorder called Hao-Fountain syndrome. However, it remains unclear which of USP7's pleiotropic functions are relevant for neurodevelopment. Here, we present a combination of quantitative proteomics, transcriptomics, and epigenomics to define the USP7 regulatory circuitry during neuronal differentiation. USP7 activity is required for the transcriptional programs that direct both the differentiat  ...[more]

Similar Datasets

2023-03-11 | PXD030707 | Pride
2023-07-20 | PXD039633 | Pride
2011-11-13 | E-GEOD-33639 | biostudies-arrayexpress
2015-06-05 | E-GEOD-69561 | biostudies-arrayexpress
2008-02-01 | E-TABM-360 | biostudies-arrayexpress
2025-05-13 | PXD050598 | Pride
2014-03-17 | E-GEOD-54630 | biostudies-arrayexpress
2025-10-11 | PXD055503 | Pride
2015-02-17 | E-GEOD-65932 | biostudies-arrayexpress
2015-06-10 | E-GEOD-61048 | biostudies-arrayexpress