Proteomics

Dataset Information

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Targeted Degradation of CDK9 Potently Disrupts the MYC Transcriptional Network


ABSTRACT: Cyclin-dependent kinase 9 (CDK9) coordinates signaling events that regulate RNA polymerase II (Pol II) pause-release states. It is an important co-factor for transcription factors, such as MYC, that drive aberrant cell proliferation when their expression is deregulated. CDK9 modulation offers an approach for attenuating dysregulation in such transcriptional programs. As a result, numerous drug development campaigns to inhibit CDK9 kinase activity have been pursued. More recently, targeted degradation has emerged as an attractive approach. However, comprehensive evaluation of degradation versus inhibition is still critically needed to assess the biological contexts in which degradation might offer superior therapeutic benefits. We validated that CDK9 inhibition triggers a compensatory mechanism that dampens its effect on MYC expression and found that this feedback mechanism was absent when the kinase is degraded. Importantly, CDK9 degradation is more effective than its inhibition for disrupting MYC transcriptional regulatory circuitry likely through the abrogation of both enzymatic and scaffolding functions of CDK9.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Suspension Culture, T Cell

DISEASE(S): Acute T Cell Leukemia

SUBMITTER: Mohammed Toure  

LAB HEAD: Angela N. Koehler

PROVIDER: PXD052300 | Pride | 2026-04-27

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
1227MT16plexPhosphofractions.msf Msf
1227MT16plexPhosphofractions.mzML Mzml
1227MT16plexPhosphofractions.mzid.gz Mzid
1227MT16plexfractions.msf Msf
1227MT16plexfractions.mzML Mzml
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Publications


CDK9 coordinates signaling events that regulate transcription and is implicated in oncogenic pathways, making it an actionable target for drug development. While numerous CDK9 inhibitors have been developed, success in the clinic has been limited. Targeted degradation offers a promising alternative. A comprehensive evaluation of degradation versus inhibition is needed to assess when degradation might offer superior therapeutic outcomes. We report a selective and potent CDK9 degrader with rapid k  ...[more]

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