Proteomics

Dataset Information

0

Chicken embryonic stem cell/primordial germ cell LC-MSMS


ABSTRACT: As germ cell precursor, primordial germ cells (PGCs) are widely used in transgenic animal production, regenerative medicine and other fields. However, the regulation mechanism of chicken PGCs is not incomplete, which leads to the insufficient amount of chicken PGCs obtained in vitro, which seriously affects the specific application of PGCs. During PGC formation (differentiation from ESCs to PGCs), some proteins have inconsistent changes in transcription level and protein abundance. Mediating proteasome degradation is one of the most important roles of protein ubiquitination, and enrichment analysis of transcriptome and proteome also suggests an important role of ubiquitination in the process of PGCs. In order to explore the important functions and potential targets of ubiquitination, we collected chicken ESCs and PGCs cells for label free ubiquitomics analysis. This study preliminarily analyzed how ubiquitination regulates the formation of chicken PGCs, providing a theoretical basis for the subsequent research and specific application of PGCs.

INSTRUMENT(S):

ORGANISM(S): Gallus Gallus (chicken)

TISSUE(S): Germ Cell, Embryonic Germ Cell

SUBMITTER: Qisheng Zuo  

LAB HEAD: Qisheng Zuo

PROVIDER: PXD052543 | Pride | 2025-09-08

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
S9421LPUb_ESC1_Slot1-53_1_2890.d.zip Other
S9421LPUb_ESC2_Slot1-54_1_2892.d.zip Other
S9421LPUb_PGC1_Slot1-51_1_2886.d.zip Other
S9421LPUb_PGC2_Slot1-52_1_2888.d.zip Other
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Publications

Ubiquitination plays an important role during the formation of chicken primordial germ cells.

Gong Wei W   Liu Xin X   Lv Xiaoqian X   Zhang Yani Y   Niu Yingjie Y   Jin Kai K   Li Bichun B   Zuo Qisheng Q  

Journal of animal science 20240101


As an important posttranslational modification, ubiquitination plays an important role in regulating protein homeostasis in eukaryotic cells. In our previous studies, both the transcriptome and proteome suggested that ubiquitination is involved in the formation of chicken primordial germ cells (PGCs). Here, affinity enrichment combined with liquid chromatography-tandem mass spectrometry (MS/MS) was used to analyze the ubiquitome during the differentiation from embryonic stem cells to PGCs, and w  ...[more]

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