Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Proteomic analysis of Fervidobacterium pennivorans DSM9078 cultivated on feather or glucose

ABSTRACT: With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium pennivorans DSM9078, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

INSTRUMENT(S): Orbitrap Exploris 480

ORGANISM(S): Fervidobacterium Pennivorans Dsm 9078

SUBMITTER: Jean ARMENGAUD

LAB HEAD: Jean Armengaud

PROVIDER: PXD054282 | Pride | 2025-05-07

REPOSITORIES: Pride

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E04203_MS23-009_13.mgf	Mgf
	E04203_MS23-009_13.raw	Raw
	E04204_MS23-009_14.mgf	Mgf
	E04204_MS23-009_14.raw	Raw
	E04205_MS23-009_15.mgf	Mgf

Items per page:

1 - 5 of 49

Publications

Transcriptomic and proteomic insights into feather keratin degradation by <i>Fervidobacterium</i>.

Javier-López Rubén R Kielbasa Mélodie M Armengaud Jean J Birkeland Nils-Kåre NK

Frontiers in microbiology 20250416

Keratin, one of the most recalcitrant and abundant proteins on Earth, constitutes a challenging and underutilized material for the poultry industry. Although it resists degradation by most commonly available enzymes, natural breakdown occurs through the action of certain fungi and bacteria. This process remains poorly understood, and only a few thermophilic and anaerobic bacteria are known to effectively degrade keratin. Some members of the genus <i>Fervidobacterium</i> have been demonstrated to ...[more]

PMID: 40309105

Similar Datasets

Proteomic analysis of Fervidobacterium sp. GSH cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium sp. GSH, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054278 | Pride

Proteomic analysis of Fervidobacterium sp. 21710 cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium sp. 21710, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054280 | Pride

Proteomic analysis of Fervidobacterium pennivorans T cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium pennivorans T, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054267 | Pride

Proteomic analysis of Fervidobacterium gondwanense DSM13020 cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium gondwanense DSM13020, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054269 | Pride

Proteomic analysis of Fervidobacterium islandicum H-21 cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium islandicum H-21, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054272 | Pride

Proteomic analysis of Fervidobacterium changbaicum CBS-1 cultivated on feather or glucose

Project description:With the aim to understand the key enzymes involved in the degradation of feather by the thermophilic bacterium Fervidobacterium changbaicum CBS-1, a deep shotgun proteomic analysis was performed on cells cultivated on feather or glucose, as well as on their exoproteome.

2025-05-07 | PXD054285 | Pride

Fervidobacterium

Project description:Fervidobacterium sp. overview

| PRJNA255535 | ENA

Gene expression in feather dermal papilla (DP)

Project description:The feather follicle is a “professional” regenerative organ that undergoes natural cycling and, regeneration after wound plucking. Similar to mammalian hair follicle, dermal papilla (DP) controls feather regeneration, shape, size, and axis. Here we report gene expression profiling for feather DP at different growth stages. For growth phase, we compared gene expression of DP, the ramogenic zone of feather branching epithelium (Erz) and the mesenchymal pulp (Pp). We also compared gene expression of DP at resting phase. To characterize the feather regeneration process, we further profiled gene expression at Day-2 and Day-4 post wound. Our results provide a resource for investigating feather growth and regeneration. Examination of gene expression in dermal papilla (DP) at growth phase and resting phase feather follicle, and during feather regeneration.

2014-01-22 | E-GEOD-42017 | biostudies-arrayexpress

Analysis of severe feather pecking behavior in a high feather pecking selection line

Project description:Even though feather pecking (FP) in laying hens has been extensively studied, a good solution to prevent chickens from this behavior under commercial circumstances has not been found. Selection against FP behavior is possible, but for a more effective selection across different populations, it is necessary to characterize the genetic mechanism associated with this behavior. In this study, we use a high FP selection line, which has been selected for 8 generations. We present evidence of the presence of a major dominant allele affecting the FP behavior by using an argument based on the presence of mixture in the distribution of the observed FP and by studying the evolution of the proportion of very high FP along the sequence of 8 generations. This hypothesis is further supported by the fact that the gene transcription profile of the birds performing high FP differs from the profile of the other birds performing FP (456 genes differentially expressed from a total of 14,077 investigated genes). Keywords: severe feather pecking , selection , modeling , inheritance pattern From each selection line (high feather pecking line, low feather pecking line and control line) 60 animals were randomly selected. Within each line the birds were randomly assigned to a cage of 20. The cages were kept in a randomized block design. Number of samples analyzed in total: 179 (60 high feather pecking line, 60 low feather pecking line, 59 control line samples. Common reference design using total-RNA purified from brain from a single F1 cross between the high and low feather pecking line as reference.

2009-09-22 | E-GEOD-10380 | biostudies-arrayexpress

Fervidobacterium thailandense

Project description:Fervidobacterium thailandense overview

| PRJNA1154372 | ENA