Proteomics

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Selective Modification of Asparagine and Glutamine via Isohypsic Reaction


ABSTRACT: The selective modification of amino acids within proteins represents the epitome of a chemoselective reaction. Current protein modification techniques are constrained to nucleophilic and redox-active residues, restricting their ability to target amino acids outside this scope. Herein, we introduce the method for selectively modifying Asparagine and Glutamine in proteins that have never been targeted before via unorthodox isohypsic reaction to bioorthogonal nitrile handles under physiological conditions. This methodology not only expands the scope of protein modification but also unveils new, ligandable sites across the human proteome through comprehensive chemoproteomic profiling. Additionally, the isohypsic dehydration reaction has been effectively employed to profile deamidation and N-glycosylation post-translational modifications on Asparagine and Glutamine, leading to the identification of previously unknown deamidation sites and significant alterations in N-glycosylation events linked to disease processes. This research offers a transformative approach with profound implications for protein engineering and understanding disease mechanisms.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human) Saccharomyces Cerevisiae (baker's Yeast)

TISSUE(S): Breast Cancer Cell

SUBMITTER: Christian Beusch  

LAB HEAD: David Ezra Gordon

PROVIDER: PXD055899 | Pride | 2026-05-25

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
data1.zip Other
data1_combined_modified_peptide.tsv Tabular
data1_combined_protein.tsv Tabular
data1_fragger.params Other
data2.zip Other
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Publications

Expanding the Chemoproteomic Toolkit to Asparagine and Glutamine.

Emenike Benjamin B   Talbott John M JM   Paikin Zachary E ZE   Beusch Christian M CM   Khoshnevis Sohail S   Gordon David E DE   Raj Monika M  

ACS chemical biology 20260409 5


Chemoproteomic strategies have revolutionized proteome annotation by targeting nucleophilic and redox-active side chains. However, the primary amides of asparagine (Asn) and glutamine (Gln) have long lacked robust chemical tools for proteome-wide interrogation. We report a chemoselective palladium-mediated dehydration that converts Asn/Gln amides to nitriles under mild aqueous conditions. This transformation enables the first proteome-wide mapping of chemically addressable Asn/Gln sites in lysat  ...[more]

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