Proteomics

Dataset Information

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Morphological and genetic screens reveal mechanisms of BiDAC-induced plasma membrane protein degradation


ABSTRACT: The discovery of bifunctional degradation activating compounds (BiDACs) has led to the development of a new class of drugs that promote the clearance of their protein targets. BiDAC-induced ubiquitination is generally believed to direct cytosolic and nuclear proteins to proteolytic destruction by proteasomes. However, pathways that govern the degradation of other classes of BiDAC targets, such as integral membrane and intraorganellar proteins, have not been investigated in depth. In this study we used morphological profiling and CRISPR/Cas9 genetic screens to investigate the mechanisms by which BiDACs induce the degradation of plasma membrane receptor tyrosine kinases (RTKs) EGFR and Her2. We found that BiDAC-dependent ubiquitination triggers the trafficking of RTKs from the plasma membrane to lysosomes for degradation. Surprisingly, functional proteasomes were required for endocytosis of RTKs upstream of the lysosome. Additionally, our screen uncovered a non-canonical function of the lysosome-associated arginine/lysine transporter PQLC2 in EGFR degradation. Our data show that BiDACs may target proteins to proteolytic machinery other than the proteasome and motivate further investigation of mechanisms that govern the degradation of diverse classes of BiDAC targets.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Epithelial Cell

DISEASE(S): Ovary Adenocarcinoma

SUBMITTER: Niclas Olsson  

LAB HEAD: David Stokoe

PROVIDER: PXD057365 | Pride | 2025-05-11

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
Human_UP000005640_20596_one_prot_seq_per_gene_20231222.fasta Fasta
PQLC2-2XPL-FlagIP-1.raw Raw
PQLC2-2XPL-FlagIP-2.raw Raw
PQLC2-WT-FlagIP-1.raw Raw
PQLC2-WT-FlagIP-2.raw Raw
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Publications


The discovery of bifunctional degradation activating compounds (BiDACs) has led to the development of a new class of drugs that promote the clearance of their protein targets. BiDAC-induced ubiquitination is generally believed to direct cytosolic and nuclear proteins to proteolytic destruction by proteasomes. However, pathways that govern the degradation of other classes of BiDAC targets, such as integral membrane and intraorganellar proteins, have not been investigated in depth. In this study w  ...[more]

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