Proteomics

Dataset Information

0

Quantification of intra-amniotic inflammation in late preterm prelabour rupture of membranes


ABSTRACT: Preterm prelabour rupture of membranes (PPROM) complicated by intra-amniotic inflammation (IAI) represents a substantial portion of preterm birth cases. Currently, IAI is frequently defined as amniotic fluid IL-6 concentration above 2600 pg/mL However, the amniotic fluid IL-6 concentration was never correlated with the global response of other proinflammatory proteins to the ongoing IAI. In this cross-sectional study, protein quantification was performed using mass spectrometry (MS) analysis with isobaric peptide labeling followed by target quantification of selected proinflammatory proteins. Levels of amniotic fluid proteins determined by MS were put into the correlation with IL-6 concentration determined by ECLIA. In total, 925 proteins were efficiently quantified in all samples and differential expression analysis revealed 378 proteins upregulated towards IL-6 concentration above 10 000 pg/mL. Four proteins were selected to verify the achieved results (LCN2, MMP8, MPO, and S100A12). ROC curves were designed and the IL-6 concentration of 10 000 pg/mL was determined as cutoff value for global IAI response.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

DISEASE(S): Preterm Premature Rupture Of The Membranes

SUBMITTER: Rudolf Kupcik  

LAB HEAD: Marie Vajrychova

PROVIDER: PXD057800 | Pride | 2025-04-30

REPOSITORIES: Pride

Dataset's files

Source:
Action DRS
MV182_TMT1_A_01.raw Raw
MV182_TMT1_A_02.raw Raw
MV182_TMT1_B_01.raw Raw
MV182_TMT1_B_02.raw Raw
MV182_TMT1_C_01.raw Raw
Items per page:
1 - 5 of 70
altmetric image

Publications

Methodological Aspects of μLC-MS/MS for Wide-Scale Proteomic Analysis of Anthracycline-Induced Cardiomyopathy.

Kupčík Rudolf R   Lenčová Olga O   Mazurová Yvona Y   Štěrba Martin M   Vajrychová Marie M  

ACS omega 20250318 12


The efforts to utilize microflow liquid chromatography hyphenated to tandem mass spectrometry (μLC-MS/MS) for deep-scale proteomic analysis are still growing. In this work, two-dimensional LC separation and peptide derivatization by a tandem mass tag (TMT) were used to assess the capability of μLC-MS/MS to reveal protein changes associated with the severe chronic anthracycline cardiotoxicity phenotype in comparison with nanoflow liquid chromatography (nLC-MS/MS). The analysis of the control and  ...[more]

Similar Datasets

2020-10-22 | PXD020329 | Pride
2010-05-18 | E-GEOD-14456 | biostudies-arrayexpress
2018-06-01 | E-MTAB-6100 | biostudies-arrayexpress
2012-08-02 | E-GEOD-39839 | biostudies-arrayexpress
2016-04-26 | GSE80248 | GEO
2023-01-05 | GSE222204 | GEO
2024-08-01 | GSE256022 | GEO
2015-09-11 | E-GEOD-63274 | biostudies-arrayexpress
2019-10-25 | GSE139366 | GEO
2014-05-27 | E-GEOD-49891 | biostudies-arrayexpress