Dataset Information

Mass spectrometry-based profiling of HDF, HDF Vim -/-, and their EVs, and the impact of these EVs on MCF7 and MCF10A proteomes

ABSTRACT: Vimentin is a well-established intracellular regulator of epithelial-mesenchymal transition (EMT). Recent studies have highlighted the role of extracellular vimentin from fibroblast-derived extracellular vesicles (EVs) in promoting wound healing and other functions. Building on these findings, we investigated the protein cargo of wild-type (WT) and vimentin-knockout (Vim -/-) human dermal fibroblasts (HDFs) and their EVs, aiming to determine whether extracellular vimentin influences EMT. Additionally, we assessed the impact of EVs from WT and Vim -/- HDFs on the proteomes of MCF7 and MCF10A cells

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Permanent Cell Line Cell, Cell Culture, Fibroblast

DISEASE(S): Breast Cancer

SUBMITTER: Michael Santos Silva

LAB HEAD: John Eriksson

PROVIDER: PXD060764 | Pride | 2025-07-10

REPOSITORIES: Pride

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Dataset's files

Source:

			Action	DRS
	20230810_HDF_KO_1_800ng_FAIMS.pepXML	Pepxml
	20230810_HDF_KO_1_800ng_FAIMS.pin	Other
	20230810_HDF_KO_1_800ng_FAIMS.raw	Raw
	20230810_HDF_KO_2_800ng_FAIMS.pepXML	Pepxml
	20230810_HDF_KO_2_800ng_FAIMS.pin	Other

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Project description:GFAP and vimentin deficiency alters gene expression in astrocytes and microglia in wild-type mice and changes the transcriptional response of reactive glia in mouse model for Alzheimer's disease. Reactive astrocytes with an increased expression of intermediate filament (IF) proteins Glial Fibrillary Acidic Protein (GFAP) and Vimentin (VIM) surround amyloid plaques in Alzheimer's disease (AD). The functional consequences of this upregulation are unclear. To identify molecular pathways coupled to IF regulation in reactive astrocytes, and to study the interaction with microglia, we examined WT and APPswe/PS1dE9 (AD) mice lacking either GFAP, or both VIM and GFAP, and determined the transcriptome of cortical astrocytes and microglia from 15- to 18-month-old mice. Genes involved in lysosomal degradation (including several cathepsins) and in inflammatory response (including Cxcl5, Tlr6, Tnf, Il1b) exhibited a higher AD-induced increase when GFAP, or VIM and GFAP, were absent. The expression of Aqp4 and Gja1 displayed the same pattern. The downregulation of neuronal support genes in astrocytes from AD mice was absent in GFAP/VIM null mice. In contrast, the absence of IFs did not affect the transcriptional alterations induced by AD in microglia, nor was the cortical plaque load altered. Visualizing astrocyte morphology in GFAP-eGFP mice showed no clear structural differences in GFAP/VIM null mice, but did show diminished interaction of astrocyte processes with plaques. Microglial proliferation increased similarly in all AD groups. In conclusion, absence of GFAP, or both GFAP and VIM, alters AD-induced changes in gene expression profile of astrocytes, showing a compensation of the decrease of neuronal support genes and a trend for a slightly higher inflammatory expression profile. However, this has no consequences for the development of plaque load, microglial proliferation, or microglial activation. 2 cell types from 6 conditions: cortical microglia and cortical astrocytes from 15-18 month old APPswe/PS1dE9 mice compared to wildtype littermates. Biological replicates: microglia from APPswe/PS1dE9, N=7, microglia from WT, N=7, astrocytes from APPswe/PS1dE9, N=4, microglia from WT, N=4

Dataset Information

Mass spectrometry-based profiling of HDF, HDF Vim -/-, and their EVs, and the impact of these EVs on MCF7 and MCF10A proteomes

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