Proteomics

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APOE genotype shapes lipid droplet composition and dynamics in human astrocytes


ABSTRACT: Lipid droplets are dynamic organelles involved in cellular functions ranging from lipid storage regulation to immune modulation. The proteins that localize to the lipid droplet membrane play a critical role in determining these functions. Recent research has highlighted the involvement of glial lipid droplets in the pathology and progression of late-onset Alzheimer’s disease. APOE, a gene encoding a lipid-binding and transport protein, is a major genetic determinant of Alzheimer’s disease risk, with different variants conferring risk or protection. In this study, we characterized the human astrocytic lipid droplet proteome and found that each APOE variant–risk, benign, and protective–produces a distinct proteomic profile in astrocytes. These variant-specific proteomes influence lipid droplet biology and broader aspects of cellular physiology. Moreover, we discovered that changes in the lipid droplet proteome directly affect the turnover and dynamics of lipid droplets in astrocytes across different APOE genotypes. Together, these findings provide new insights into how APOE variants reshape astrocyte biology and identify lipid droplets as a modifiable aspect of Alzheimer’s disease pathology.

INSTRUMENT(S):

ORGANISM(S): Homo Sapiens (human)

TISSUE(S): Cell Culture

SUBMITTER: Yue Andy Qi  

LAB HEAD: Ying Hao

PROVIDER: PXD067161 | Pride | 2026-07-01

REPOSITORIES: Pride

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Publications

<i>APOE</i> genotypes differentially remodel the astrocytic lipid droplet-associated proteome to shape lipid droplet dynamics.

Cuní-López Carla C   Root Jessica T JT   Hao Ying Y   Kowal Isabelle I   Blomberg Niek N   Ghirlando Rodolfo R   Yang Linda G LG   Koppes-den Hertog Sascha J SJ   Cookson Mark R MR   van der Kant Rik R   Giera Martin M   Qi Yue Andy YA   Narayan Priyanka S PS  

bioRxiv : the preprint server for biology 20250820


The lipids and proteins that comprise lipid droplets regulate several cellular functions including lipid storage, stress responses, and inflammation. Glial lipid droplets have been implicated in the pathogenesis and progression of Alzheimer's disease (AD), yet the mechanisms linking genetic risk to lipid droplet biology remain unclear. Here we examined how <i>APOE</i>, the strongest genetic modulator of late-onset AD, impacts lipid droplet composition and dynamics. We defined the lipid droplet-a  ...[more]

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