Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Root metagenome

ABSTRACT: Soybean root microbiome

PROVIDER: PRJDB11200 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR272437_1.fastq.gz	Fastqsanger.gz
	DRR272437_2.fastq.gz	Fastqsanger.gz
	DRR272438_1.fastq.gz	Fastqsanger.gz
	DRR272438_2.fastq.gz	Fastqsanger.gz
	DRR272439_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Root metagenome

Project description:Soybean root-nodule microbiome based on 16S and nifH sequencing

| PRJNA433238 | ENA

Gene expression of soybean root tips under water deficits

Project description:As an important adaptation to drought stress, several agronomic species, such as soybean and maize, can maintain the primary root substantial elongation rates at low water potentials, whereas shoot growth stops completely. In soybean, kinematic characterization of the spatial patterns of cell expansion within the root elongation zone showed that at low water potentials, elongation rates were preferentially maintained toward the root apex but were progressively inhibited at more basal locations, resulting in a shortened growth zone. To explore the molecular mechanism of root elongation in response to water stress, we set out to examine the expression of soybean genes in different root regions after 5 hours (5h) and 48 hours (48h) water stress treatment using the Affymetrix Soybean GeneChip containing 37,500 G. max probe sets.

2020-08-15 | GSE102749 | GEO

Soybean root hair cell response to Bradyrhizobium japonicum inoculation

2010-09-16 | GSE24145 | GEO

root metagenome

Project description:root microbiome

| PRJDB8234 | ENA

Expression data of Soybean root apical meristem and leaf

Project description:we used soybean genome chips to investigate the expression pattern of about 37,500 unique ESTs locating on soybean Affymetrix chips (Affymetrix Inc.). KEYWORDS: Tissue comparison we compared soybean root meristem samples with non-meristematic tissues in 10 days old vegetative stage seedlings to define a unique set of root meristem enriched genes.

2011-05-31 | E-GEOD-27894 | biostudies-arrayexpress

Soybean root hair cell response to Bradyrhizobium japonicum inoculation

Project description:Soybean root hair transcriptional response to their inoculation by the symbiotic bacteria B. japonicum involved in soybean nodulation. We used the first generation of an Affymetrix microarray to quantify the abundance of the transcripts from soybean root hair cells inoculated and mock-inoculated by B. japonicum. This experiment was performed on a time-course from 6 to 48 hours after inoculation. Soybean seeds were sowed on sterile agar medium and grown for 3 days in a growth chamber before being treated with H2O (mock-inoculated) or B. japonicum (inoculated). Soybean root hair cells were isolated at different time points (6hr, 12hr, 18hr, 24hr, 36hr, 48hr) after treatment. For each time point and condition, 3 or 4 independent biological replicates were produced.

2010-09-16 | E-GEOD-24145 | biostudies-arrayexpress

root metagenome

Project description:Root microbiome Targeted Locus (Loci)

| PRJNA264963 | ENA

root metagenome

Project description:Root-associated bacterial diversity in roots of soybean and corn

| PRJNA303118 | ENA

Multi-omics analysis of application on regulation of phosphorus transport in soybean root

Project description:The regulatory effects of uneven phosphorus supplies on phosphorus transport in soybean roots is still unclear. To further analyze the regulatory effects of low-phosphorus stress on phosphorus transport in soybean roots and the effects of uneven phosphorus application on the physiological mechanism of phosphorus transport in soybean roots, dual-root soybean plants were prepared via grafting, and a sand culture experiment was performed.

2022-10-14 | PXD035894 | Pride

Soybean root

Project description:Soybean root Raw sequence reads

| PRJNA495157 | ENA