Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Heliopora

ABSTRACT: Phylogeography of blue corals (genus Heliopora) across the Indo-West Pacific

PROVIDER: PRJDB11393 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR295376.fastq.gz	Fastqsanger.gz
	DRR295377_1.fastq.gz	Fastqsanger.gz
	DRR295377_2.fastq.gz	Fastqsanger.gz
	DRR295378_1.fastq.gz	Fastqsanger.gz
	DRR295378_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 489

Similar Datasets

Heliopora coerulea

Project description:RADseq population genomics confirms divergence across closely related species in blue coral (Heliopora coerulea)

| PRJDB7088 | ENA

Heliopora coerulea

Project description:Heliopora coerulea transcriptome

| PRJDB5159 | ENA

Heliopora coerulea

Project description:Heliopora coerulea overview

| PRJNA190764 | ENA

Heliopora coerulea

Project description:Heliopora coerulea Transcriptome or Gene expression

| PRJNA397991 | ENA

Heliopora coerulea

Project description:Spatial Autocorrelation Analysis using MIG-seq data revealed gamete and dispersal range within reef of the blue coral, Heliopora coerulea

| PRJDB11392 | ENA

High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity

2013-04-08 | GSE42684 | GEO

Crown-of-Thorns starfish excretory/secretory proteins under aggregation and alarm

Project description:The Crown-of-Thorns starfish (COTS), Acanthaster planci, is a highly fecund predator of reef-building corals distributed throughout the Indo-Pacific. COTS population outbreaks cause substantial loss of coral cover, diminishing the integrity and resilience of the reef ecosystems thus increasing their susceptibility to climate change. We sequenced genomes of A. planci from the Great Barrier Reef, Australia (GBR) and Okinawa, Japan (OKI) to guide identification of species-specific peptide communication with potential applications in mitigation strategies. The genome-encoded proteins excreted and secreted into the surrounding seawater by COTS forming aggregations and by those escaping the predatory giant triton snail, Charonia tritonis, were identified LC-MS/MS.

2017-04-06 | PXD005409 | Pride

Transcriptome profiles of sousa chinensis leucocyte

Project description:de novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome for functional genomic analysis

2013-08-30 | E-MTAB-1748 | biostudies-arrayexpress

High natural gene expression variation in the reef-building coral Acropora millepora: Potential for acclimative and adaptive plasticity

Project description:This experiment assessed the natural gene expression variation present between colonies of the Indo-Pacific reef-building coral Acropora millepora, and additionally explored whether gene expression differed between two different intron haplotypes according to intron 4-500 in a carbonic anhydrase homolog. This study found no correspondence between host genotype and transcriptional state, but found significant intercolony variation, detecting 488 representing unique genes or 17% of the total genes analyzed. Such transcriptomic variation could be the basis upon which natural selection can act. Underlying variation could potentially allow reef corals to respond to different environments. Whether this source of variation and the genetic responses of corals and its symbionts will allow coral reefs to cope to the rapid pace of global change remains unknown. A. millepora colonies were brought to a common garden in the reef lagoon, i.e. under the same environmental conditions. This common garden combined with acclimatization removes environmental effects on the physiology of the coral colonies. For the comparison of the two intron haplotypes, we applied a multiple dye-swap microarray design for the two groups of coral colonies (N=3 per group) defined based on the two genotypes resolved with the use of intron 4-500 (Fig. 1). To also examine the intra-haplotype variation we added a loop design nested to the above multiple dye-swap design, where three samples per colony were included. Colonies 1, 2, and 3 are of intron 4-500 haplotype 1; colonies 4, 5, and 6 are haplotype 2.

2013-04-08 | E-GEOD-42684 | biostudies-arrayexpress

Project description:Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals

| PRJNA549817 | ENA