Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methylomarinovum caldicuralii strain:IT-9

ABSTRACT: Genome analysis of a marine methanotroph, Methylomarinovum caldicuralii IT-9

PROVIDER: PRJDB11744 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Methylomarinovum strain:IN45

Project description:Genome analysis of a novel marine methanotroph, Methylomarinovum sp. IN45

| PRJDB11749 | ENA

Methylomarinum sp. strain:IN20

Project description:Genome analysis of a novel marine methanotroph, Methylomarinum sp. IN20

| PRJDB11751 | ENA

Methylomarinum sp. strain:JGM

Project description:Genome analysis of a novel marine methanotroph, Methylomarinum sp. JGM

| PRJDB11753 | ENA

Methylobacter marinus

Project description:Genome analysis of a marine methanotroph, Methylobacter marinus MR1

| PRJDB11745 | ENA

Genomic and Transcriptomic Analyses of the Facultative Methanotroph, Methylocystis Strain SB2

Project description:Here we present the assembled genome of the facultative methanotroph, Methylocystis strain SB2, along with assessment of its transcriptome when grown on methane vs. ethanol. As expected, transcriptomic analyses indicate methane is converted to carbon dioxide via the canonical methane oxidation pathway for energy generation, and that carbon is assimilated at the level of formaldehyde via the serine cycle. When grown on ethanol, it appears this strain converts ethanol to acetyl-CoA and then utilizes the TCA cycle for energy generation and the ethylmalonyl CoA pathway for the production of biomass. All cultures were grown in triplicates for subsequent DNA and RNA extraction as well as for subsequent sequencing using Illumina. Transcriptomic analysis results presented in this Series.

2014-03-20 | E-GEOD-51345 | biostudies-arrayexpress

Genomic and Transcriptomic Analyses of the Facultative Methanotroph, Methylocystis Strain SB2

2014-03-20 | GSE51345 | GEO

Global response of Silicibacter pomeroyi strain DSS3 to dimethyl sulfoniopropionate (DMSP)

Project description:Dimethylsufoniopropionate (DMSP) is an important and abundant organic sulfur compound and an important substrate for marine bacterioplankton. The Roseobacter clade of marine alpha-proteobacteria, including Silicibacter pomeroyi strain DSS3, are known to be a key phylogenetic group involved in DMSP degradaton. The fate of DMSP has important implications for the global sulfur cycle, but the genes involved in this process and their regulation are largely unknown. S. pomeroyi is capable of performing two major pathways of DMSP degradation, making it an interesting model organism. Based on the full genome sequence of this strain we designed an oligonucleotide-based microarray for the detection of transcripts of nearly all genes. The array was used to study the transcriptional response of S. pomeroyi cultures to additions of DMSP or Acetate in a time series experiment. We identified a number of DMSP-upregulated genes that could be assigned to potential roles in the metabolization of DMSP. DMSP also affected the transcription of other groups of genes, including genes for transport and metabolization of peptides, amino-acids and polyamines. High DMSP concentrations may be a chemical signal indicating phytoplankton abundance and elicit a regulatory response aimed at making maximum use of the available nutrients under these conditions. Keywords: Microarray, marine bacterium, messenger RNA, transcription, sulfur metabolism

2007-12-09 | GSE5480 | GEO