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Ipomoea batatas strain:J-Red, Choshu

ABSTRACT: ddRAD-seq data for nematode resistance in sweetpotato

PROVIDER: PRJDB12577 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	DRR332022.fastq.gz	Fastqsanger.gz
	DRR332022_1.fastq.gz	Fastqsanger.gz
	DRR332022_2.fastq.gz	Fastqsanger.gz
	DRR332023.fastq.gz	Fastqsanger.gz
	DRR332023_1.fastq.gz	Fastqsanger.gz

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Project description:Transcriptome analysis for nematode resistance in sweetpotato

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Project description:Sweetpotato (Ipomoea batatas L.) is a globally important economic food crop. It belongs to Convolvulaceae family and origins in the tropics; however, sweetpotato is sensitive to cold stress during storage. In this study, we performed transcriptome sequencing to investigate the sweetpotato response to chilling stress during storage. A total of 110,110 unigenes were generated via high-throughput sequencing. Differentially expressed genes (DEGs) analysis showed that 18,681 genes were up-regulated and 21,983 genes were down-regulated in low temperature condition. Many DEGs were related to the cell membrane system, antioxidant enzymes, carbohydrate metabolism, and hormone metabolism, which are potentially associated with sweetpotato resistance to low temperature. The existence of DEGs suggests a molecular basis for the biochemical and physiological consequences of sweetpotato in low temperature storage conditions. Our analysis will provide a new target for enhancement of sweetpotato cold stress tolerance in postharvest storage through genetic manipulation.

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