Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bovine metagenome

ABSTRACT: Metagenome-assembled genomes from the rumen microbiome of cattle in Japan

PROVIDER: PRJDB13503 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR374759_1.fastq.gz	Fastqsanger.gz
	DRR374759_2.fastq.gz	Fastqsanger.gz
	DRR374760_1.fastq.gz	Fastqsanger.gz
	DRR374760_2.fastq.gz	Fastqsanger.gz
	DRR374761_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

bovine gut metagenome

Project description:Cattle-yak Rumen metagenome Metagenome

| PRJNA1070716 | ENA

bovine gut metagenome

Project description:Tibetan Yellow Cattle rumen metagenome Metagenome

| PRJNA1070718 | ENA

bovine gut metagenome

Project description:Rumen microbiome and feed efficiency in beef cattle

| PRJNA377097 | ENA

bovine gut metagenome

Project description:Rumen microbiome influences feed efficiency in beef cattle

| PRJNA362792 | ENA

Microbiota-host crosstalk mechanism in the newborn and adult rumen at single-cell resolution

Project description:As the unique organ, rumen plays vital roles in providing products for humans, however, the underlying cell composition and interactions with epithelium-attached microbes remain largely unknown. Herein, we performed an integrated analysis in single-cell transcriptome, epithelial microbiome, and metabolome of rumen tissues to explore the differences of microbiota-host crosstalk between newborn and adult cattle models. We found that fewer epithelial cell subtypes and more abundant immune cells (e.g., Th17 cells) in the rumen tissue of adult cattle. Metabolism-related functions and oxidation-reduction process were significantly upregulated in the adult rumen epithelial cell subtypes. The epithelial Desulfovibrio was significantly enriched in the adult cattle. To further clarify the role of Desulfovibrio in host’s oxidation-reduction process, we performed metabolomics analysis of rumen tissues and found that Desulfovibrio showed a high co-occurrence probability with the pyridoxal in the adult cattle compared with newborn ones. The adult rumen epithelial cell subtypes also showed stronger ability of pyridoxal binding. These indicates that Desulfovibrio and pyridoxal likely play important roles in maintaining redox balance in adult rumen. The integrated analysis provides novel insights into the understanding of rumen function and facilitate the future precision improvement of rumen function and milk/meat production in cattle.

2022-11-17 | GSE183285 | GEO

bovine metagenome

Project description:Exploring the impact of rumen microbiome on cattle carcass traits

| PRJDB16747 | ENA

bovine gut metagenome

Project description:Bovine rumen microbiome Metagenome

| PRJNA244109 | ENA

bovine gut metagenome

Project description:Cow rumen microbiome metagenome

| PRJNA319009 | ENA

bovine gut metagenome

Project description:Subacute Rumen Acidosis Microbiome Metagenome