Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Microbial community in the Seto Inland Sea of Japan

PROVIDER: PRJDB13684 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR380361_1.fastq.gz	Fastqsanger.gz
	DRR380361_2.fastq.gz	Fastqsanger.gz
	DRR380362_1.fastq.gz	Fastqsanger.gz
	DRR380362_2.fastq.gz	Fastqsanger.gz
	DRR380363_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 164

Similar Datasets

marine plankton metagenome

Project description:marine eDNA of Seto Inland Sea at Ushimado, Okayama Japan

| PRJDB9059 | ENA

marine metagenome

Project description:Microbial community in Minamata Bay Japan

| PRJDB16353 | ENA

marine metagenome

Project description:Sea microbial community Metagenome

| PRJNA248706 | ENA

marine metagenome

Project description:Seasonal monitoring of microbial community in Sendai Bay, Japan

| PRJDB8186 | ENA

marine metagenome

Project description:Microbial community composition of Arctic sea water

| PRJNA214807 | ENA

marine sediment metagenome

Project description:Microbial community of deep sea sediment in South China Sea

| PRJNA360023 | ENA

marine metagenome

Project description:Microbial community from polynya in the Amundsen Sea

| PRJNA176670 | ENA

marine metagenome

Project description:Microbial community isolated from South China Sea marine sediment

| PRJNA33581 | ENA

RNA-Seq of shallow-water mussel Mytilus galloprovincialis under in situ hydrostatic pressure exposure

Project description:Recent studies have unveiled the deep sea as a rich biosphere, populated by species descended from shallow-water ancestors post-mass extinctions. Research on genomic evolution and microbial symbiosis has shed light on how these species thrive in extreme deep-sea conditions. However, early adaptation stages, particularly the roles of conserved genes and symbiotic microbes, remain inadequately understood. This study examined transcriptomic and microbiome changes in shallow-water mussels Mytilus galloprovincialis exposed to deep-sea conditions at the Site-F cold seep in the South China Sea. Results reveal complex gene expression adjustments in stress response, immune defense, homeostasis, and energy metabolism pathways during adaptation. After 10 days of deep-sea exposure, shallow-water mussels and their microbial communities closely resembled those of native deep-sea mussels, demonstrating host and microbiome convergence in response to adaptive shifts. Notably, methanotrophic bacteria, key symbionts in native deep-sea mussels, emerged as a dominant group in the exposed mussels. Host genes involved in immune recognition and endocytosis correlated significantly with the abundance of these bacteria. Overall, our analyses provide insights into adaptive transcriptional regulation and microbiome dynamics of mussels in deep-sea environments, highlighting the roles of conserved genes and microbial community shifts in adapting to extreme environments.

2024-11-24 | GSE263620 | GEO

marine metagenome

Project description:Sargasso Sea Bacterioplankton Community

| PRJNA73691 | ENA