Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa

ABSTRACT: developing embryo gene expression in wild type and osmo25a mutant in rice

PROVIDER: PRJDB14224 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR400702_1.fastq.gz	Fastqsanger.gz
	DRR400702_2.fastq.gz	Fastqsanger.gz
	DRR400703_1.fastq.gz	Fastqsanger.gz
	DRR400703_2.fastq.gz	Fastqsanger.gz
	DRR400704_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Oryza sativa

Project description:developing embryo gene expression in wild type and gle4 in rice

| PRJDB7888 | ENA

Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13

2011-12-01 | GSE29577 | GEO

Agilent 44K Rice Oligo DNA Microarray RAP-DB (G2519F#15241); genome-wide transcriptional analysis of Aluminum-responsive genes in rice (Oryza sativa).

Project description:By comparing transcriptional profiling between a wild-type rice and an Al-sensitive rice mutant star1, we found that rice possesses novel mechanisms of Al-tolerance in addition to ART1-regulated mechanism in rice.

2012-09-19 | GSE40964 | GEO

Oryza sativa

Project description:Expression data from rice panicles of osmads1 mutant and wild type

| PRJNA263162 | ENA

Oryza sativa

Project description:Expression data from rice seedlings of wild type and the CHR729 mutant

| PRJNA134739 | ENA

Expression data from Oryza sativa 3037 (wild-type) and sd37 (mutant) seedlings

Project description:We characterized a rice (Oryza sativa L ssp. indica cultivar 3037) semi-dwarf mutant sd37, in which CYP96B4 gene (Cytochrome P450 96B subfamily) was identified as the target gene by map-based cloning and complementation test. A point mutation in CYP96B4 leads to a substitution of Thr to Lys in the SRS2 region. The sd37 leaves, panicles and seeds are all smaller compared with those of wild-type, and histological analysis showed that the decreased cell number was the main reason for the dwarf phenotype. We used microarrays to detail the global programme of gene expression underlying cellularisation and identified distinct classes of up- and down- regulated genes during this process.

2013-07-09 | GSE48593 | GEO

Global gene expression profiles of Oryza sativa wild type Nipponbare and mutant coi1-13

Project description:To reveal the underlying molecular mechanism of jasmonate inhibits gibberellins signaling in rice, we performed transcriptional profiling of wild type nipponbare and mutant coi1-13 plants on a global scale using the Affymetrix GeneChip Rice Genome Array Rice young uppermost internodes were harvested and three biological repeats were performed on Nippombare (wild-type) and coi1-13 (mutant), respectively.

2011-12-01 | E-GEOD-29577 | biostudies-arrayexpress

Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stage

Project description:To reveal the underlying molecular mechanism of Gif1 action in the control of grain filling and yield improvement, we performed transcriptional profiling of wild type Zhonghua11 and mutant gif1 plants in early filling stage on a global scale using the Affymetrix GeneChip Rice Genome Array Keywords: Filling stage

2007-11-02 | GSE9498 | GEO

LATERAL FLORET 2 encoding a SNF2 chromatin remodeling factor regulates axillary meristem of spikelet development in rice (Oryza sativa)

Project description:Compared with the wild type, in the lf2 mutant, 835 upregulated genes and 832 downregulated genes were detected, including a large number of genes that regulate the development of rice floral/panicle organs and are involved in the auxin regulation pathway.

2025-01-17 | GSE286435 | GEO

Rice (Oryza sativa) proteome

Project description:Here, we present OryzaPG-DB, a rice proteome database based on shotgun proteogenomics, which incorporates the genomic features of experimental shotgun proteomics data. This version of the database was created from the results of 27 nanoLC-MS/MS runs on a hybrid ion trap-orbitrap mass spectrometer, which offers high accuracy for analyzing tryptic digests from undifferentiated cultured rice cells. Peptides were identified by searching the product ion spectra against the protein, cDNA, transcript and genome databases from Michigan State University, and were mapped to the rice genome. Approximately 3200 genes were covered by these peptides and 40 of them contained novel genomic features. Users can search, download or navigate the database per chromosome, gene, protein, cDNA or transcript and download the updated annotations in standard GFF3 format, with visualization in PNG format. In addition, the database scheme of OryzaPG was designed to be generic and can be reused to host similar proteogenomic information for other species. OryzaPG is the first proteogenomics-based database of the rice proteome, providing peptide-based expression profiles, together with the corresponding genomic origin, including the annotation of novelty for each peptide.

2016-07-20 | PXD004603 | JPOST Repository

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data