Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hordeum vulgare subsp. spontaneum strain:OUH602

ABSTRACT: Gene expression during spike development in wild barley

PROVIDER: PRJDB14465 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR411676_1.fastq.gz	Fastqsanger.gz
	DRR411676_2.fastq.gz	Fastqsanger.gz
	DRR411677_1.fastq.gz	Fastqsanger.gz
	DRR411677_2.fastq.gz	Fastqsanger.gz
	DRR411678_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Hordeum vulgare subsp. spontaneum

Project description:Sequencing of a wild barley accession

| PRJEB630 | ENA

Hordeum vulgare subsp. spontaneum

Project description:The genomes of two wild barley

| PRJDB15093 | ENA

Hordeum vulgare subsp. spontaneum

Project description:Wild Barley Diversity Collection Exome Capture

| PRJNA472251 | ENA

Hordeum vulgare subsp. spontaneum strain:OUH602

Project description:Gene expression of floral organs in wild barley

| PRJDB14466 | ENA

Hordeum vulgare

Project description:Gene expression in the barley spike during drought stress

| PRJNA118475 | ENA

Hordeum vulgare and Hordeum spontaneum

Project description:Small RNA and degradome sequencing of cultivated barley and Tibetan wild barley

| PRJNA507337 | ENA

Hordeum vulgare subsp. spontaneum breed:wild barley | cultivar:wild barley

Project description:Hordeum vulgare subsp. spontaneum breed:wild barley | cultivar:wild barley Transcriptome or Gene expression

| PRJNA828098 | ENA

Geography of Genetic Structure in Barley Wild Relative Hordeum vulgare subsp. spontaneum in Jordan.

Project description:Informed collecting, conservation, monitoring and utilization of genetic diversity requires knowledge of the distribution and structure of the variation occurring in a species. Hordeum vulgare subsp. spontaneum (K. Koch) Thell., a primary wild relative of barley, is an important source of genetic diversity for barley improvement and co-occurs with the domesticate within the center of origin. We studied the current distribution of genetic diversity and population structure in H. vulgare subsp. spontaneum in Jordan and investigated whether it is correlated with either spatial or climatic variation inferred from publically available climate layers commonly used in conservation and ecogeographical studies. The genetic structure of 32 populations collected in 2012 was analyzed with 37 SSRs. Three distinct genetic clusters were identified. Populations were characterized by admixture and high allelic richness, and genetic diversity was concentrated in the northern part of the study area. Genetic structure, spatial location and climate were not correlated. This may point out a limitation in using large scale climatic data layers to predict genetic diversity, especially as it is applied to regional genetic resources collections in H. vulgare subsp. spontaneum.

| S-EPMC4981475 | biostudies-literature

Hordeum vulgare Transcriptome or Gene expression

Project description:We hypothesized that the genome segments of cultivated barley should show certain similarity with its ancestral wild barley. Instead of whole genome sequences, we employed RNA-Seq to investigated the genomic origin of modern cultivated barley using some representative wild barley genotypes from the Near East and Tibet, and representative world-wide selections of cultivated barley.

2014-10-06 | E-MTAB-4221 | biostudies-arrayexpress

Hordeum vulgare strain:landrace Transcriptome or Gene expression

Project description:In the present study, we investigated the transcriptome features during hulless barley grain development. Using Illumina paired-end RNA-Sequencing, we generated two data sets of the developing grain transcriptomes from two hulless barley landraces.

2014-06-19 | E-MTAB-4307 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data