Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Megaviricetes

ABSTRACT: Whole genome sequencing of reference marseillevirus and viruses isolated from lake Biwa

PROVIDER: PRJDB14605 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	DRR428509_1.fastq.gz	Fastqsanger.gz
	DRR428509_2.fastq.gz	Fastqsanger.gz
	DRR428510_1.fastq.gz	Fastqsanger.gz
	DRR428510_2.fastq.gz	Fastqsanger.gz
	DRR428511_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

A giant virus genome is densely packaged by stable nucleosomes

Project description:The doublet histones of Marseillevirus are distantly related to the four eukaryotic core histones and wrap DNA to form remarkably similar nucleosomes. By releasing Marseillevirus chromatin from virions into solution and performing genome-wide nuclease digestion and chemical cleavage assays, we find that the higher-order organization of Marseillevirus chromatin differs greatly from that of eukaryotes. Marseillevirus nucleosomes fully protect DNA within virions, without linker DNA or phasing along genes. Likewise, we observe that most nucleosomes reconstituted onto 3-copy tandem repeats of a nucleosome positioning sequence are tightly packed and fully wrapped. We also document repeat generation and instability during viral passage in amoeboid culture. Dense promiscuous packing of fully wrapped nucleosomes rather than “beads-on-a-string” with genic punctuation suggests a viral genome protection function for doublet histones.

2022-09-27 | GSE193224 | GEO

Sphingomonadaceae

Project description:Sphingomonadaceae strains isolated from Lake Biwa (Japan)

| PRJDB12854 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Bosea sp. BIWAKO-01

Project description:Whole genome sequencing project of metallogenium generating bacteria Bosea sp. isolated from Biwa-ko Lake

| PRJDB4454 | ENA

Project description:Lake Biwa Metagenomics

| PRJNA1327415 | ENA

Pandoravirus strain:biwa

Project description:Genomic sequeincing of a pandoravirus isolated from Lake Biwa.

| PRJDB18597 | ENA

Mapping epigenetic divergence in the massive radiation of Lake Malawi cichlid fishes

Project description:Whole-genome methylomes and total transcriptomes for muscle and liver tissues of Lake Malawi cichlid species characterised in the context of phenotypic diversification.

2021-08-19 | GSE158514 | GEO

freshwater metagenome

Project description:Microbial sequencing of a freshwater lake (Lake Biwa, Japan)

| PRJDB15196 | ENA

B. pseudomallei K96243 genome: Control vs. B. pseudomallei environmental or clinical isolates

Project description:To use whole genome microarrays to compare the differences in genome contents of 5 B. pseudomallei isolated from clinical specimens and environmental sample with B. pseudomallei K96243 reference strain and reveals variable patterns of Genomic Islands (GIs) Keywords: Comparative genomic hybridization

2012-07-31 | GSE19558 | GEO

Metapseudomonas otitidis

Project description:Complete genome sequence of Pseudomonas otitidis strain MrB4, isolated from Lake Biwa in Japan

| PRJDB9285 | ENA